Non-Coding RNA Search

Ss1.1-Pig2-116G15.5

Sequence:


               
               GGGAGTGGGACGTACCAGGAGGGAAGCACAGAGGGAGCACACCCCGGGCCCCATCCAGAT
GGTTTTGTGCCTCTGGGCGCCCTCCTGCAGCTGCCTCAGTTCCGCAGCTTCTCAGCTGAG
GATGTGCAGCGCGTGGTGGACACCAACGAGAAGCAGCGGTTCACCCTGCAGCCGGGGGAC
CCCAGCACGGGCCCTCTCATCCGGGCCAATCAGGGTCACTCCTTGCAGGTACCTGCGTTG
GAGCTGATCCCCCTGGAGACCCCGCAGGCCCTGCCTCTGATGCTCGTCCACGGCACATTC
TGGCGGCACTGGCCATCCATCCTGCTCAAGGGCCTGTCCCGCCAGGGAAGGACGCACATC
CACCTGGCCCCGGGACTGCCTGGGGACCCTGGCGTCATCAGTGGCATGAGGCCCAACTGT
GAAGTGGCTGTGTTCATCAACGGGCCCCAGGCCCTGGCAGATGGAATCCCCTTCTTCCGC
TCTGCCAATGGGGTGATCCTGACTCCAGGGAACACTGATGGCGTCTTGCTTCCCAAATAC
TGAAGTGGCTGTGTTCATCAACGGGCCCCAGGCCCTGGCAGATGGAATCCCCTTCTTCCG
CTCTGCCAATGGGGTGATCCTGACTCCAGGGAACGCTGATGGCGTCTTGCTTCCCAAATA
CTTCAAGGAGGCCCTGCAGCTACGCCCTACCCGAAAGCCCCTCTCCTTGGCTGGTAATGA
AGAGACAGAGTGTCAGCGTGGCCCCAAGCACAGCTCCAGAGGAAGAAGGACAACCCCACA
ATAAAAAAAGAT------------------------------------------------
------------------------------------------------------------
------------------------ATTTATTTTTTAAAAATGTAAAAAGACAACAAAAAA
GAAACTCCAGTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGGAGTGGGACGTACCAGGAGGGAAGCACAGAGGGAGCACACCCCGGGCCCCATCCAGAT
GGTTTTGTGCCTCTGGGCGCCCTCCTGCAGCTGCCTCAGTTCCGCAGCTTCTCAGCTGAG
GATGTGCAGCGCGTGGTGGACACCAACGAGAAGCAGCGGTTCACCCTGCAGCCGGGGGAC
CCCAGCACGGGCCCTCTCATCCGGGCCAATCAGGGTCACTCCTTGCAGGTACCTGCGTTG
GAGCTGATCCCCCTGGAGACCCCGCAGGCCCTGCCTCTGATGCTCGTCCACGGCACATTC
TGGCGGCACTGGCCATCCATCCTGCTCAAGGGCCTGTCCCGCCAGGGAAGGACGCACATC
CACCTGGCCCCGGGACTGCCTGGGGACCCTGGCGTCATCAGTGGCATGAGGCCCAACTGT
GAAGTGGCTGTGTTCATCAACGGGCCCCAGGCCCTGGCAGATGGAATCCCCTTCTTCCGC
TCTGCCAATGGGGTGATCCTGACTCCAGGGAACACTGATGGCGTCTTGCTTCCCAAATAC
TGAAGTGGCTGTGTTCATCAACGGGCCCCAGGCCCTGGCAGATGGAATCCCCTTCTTCCG
CTCTGCCAATGGGGTGATCCTGACTCCAGGGAACGCTGATGGCGTCTTGCTTCCCAAATA
CTTCAAGGAGGCCCTGCAGCTACGCCCTACCCGAAAGCCCCTCTCCTTGGCTGGTAATGA
AGAGACAGAGTGTCAGCGTGGCCCCAAGCACAGCTCCAGAGGAAGAAGGACAACCCCACA
ATAAAAAAAGAT------------------------------------------------
------------------------------------------------------------
------------------------ATTTATTTTTTAAAAATGTAAAAAGACAACAAAAAA
GAAACTCCAGTT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|13477317|gb|AAH05133.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|13477317|gb|AAH05133.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               578-696, - strand, RNAz p=0.595546

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               578-696, - strand, RNAz p=0.595546

Aligned organism(s): 20 entry(ies)

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Aligned organism(s): 20 entry(ies)

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               43-230, gnl|bosTau2|chr29 (33345358-33345171)
               

               
               43-230, gnl|canFam2|chr18 (55859030-55858901)
               

               
               43-230, gnl|fr1|chrUn (49338045-49338174)
               

               
               43-230, gnl|hg17|chr11 (63748848-63748977)
               

               
               43-230, gnl|Hg17|chr11 (63749034-63748847)
               

               
               43-230, gnl|loxAfr1|scaffold_29620 (3192-3321)
               

               
               43-230, gnl|mm7|chr19 (6817969-6817840)
               

               
               43-230, gnl|Mm7|chr19 (6817784-6817968)
               

               
               43-230, gnl|monDom2|scaffold_1079 (13089-12960)
               

               
               43-230, gnl|panTro1|chr9 (64736082-64736211)
               

               
               43-230, gnl|rheMac2|chr14 (10204147-10204019)
               

               
               43-230, gnl|rn3|chr1 (209830396-209830267)
               

               
               43-230, gnl|tetNig1|chrUn_random (89861932-89862061)
               

               
               43-230, gnl|xenTro1|scaffold_684 (252524-252653)
               


               
               533-832, gnl|bosTau2|chrX (35056095-35056389)
               

               
               533-832, gnl|Hg17|chr11 (63748381-63747888)
               

               
               533-832, gnl|Mm7|chr19 (6818381-6818877)
               


               
               578-704, gnl|bosTau2|chr29 (33344566-33344440)
               

               
               578-704, gnl|Hg17|chr11 (63748262-63748136)
               

               
               578-704, gnl|Mm7|chr19 (6818518-6818646)

Aligned organism(s): 20 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               43-230, gnl|bosTau2|chr29 (33345358-33345171)
               

               
               43-230, gnl|canFam2|chr18 (55859030-55858901)
               

               
               43-230, gnl|fr1|chrUn (49338045-49338174)
               

               
               43-230, gnl|hg17|chr11 (63748848-63748977)
               

               
               43-230, gnl|Hg17|chr11 (63749034-63748847)
               

               
               43-230, gnl|loxAfr1|scaffold_29620 (3192-3321)
               

               
               43-230, gnl|mm7|chr19 (6817969-6817840)
               

               
               43-230, gnl|Mm7|chr19 (6817784-6817968)
               

               
               43-230, gnl|monDom2|scaffold_1079 (13089-12960)
               

               
               43-230, gnl|panTro1|chr9 (64736082-64736211)
               

               
               43-230, gnl|rheMac2|chr14 (10204147-10204019)
               

               
               43-230, gnl|rn3|chr1 (209830396-209830267)
               

               
               43-230, gnl|tetNig1|chrUn_random (89861932-89862061)
               

               
               43-230, gnl|xenTro1|scaffold_684 (252524-252653)
               


               
               533-832, gnl|bosTau2|chrX (35056095-35056389)
               

               
               533-832, gnl|Hg17|chr11 (63748381-63747888)
               

               
               533-832, gnl|Mm7|chr19 (6818381-6818877)
               


               
               578-704, gnl|bosTau2|chr29 (33344566-33344440)
               

               
               578-704, gnl|Hg17|chr11 (63748262-63748136)
               

               
               578-704, gnl|Mm7|chr19 (6818518-6818646)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               nmm (0.132802)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nmm (0.132802)

	43-230, gnl\|bosTau2\|chr29 (33345358-33345171)
	43-230, gnl\|canFam2\|chr18 (55859030-55858901)
	43-230, gnl\|fr1\|chrUn (49338045-49338174)
	43-230, gnl\|hg17\|chr11 (63748848-63748977)
	43-230, gnl\|Hg17\|chr11 (63749034-63748847)
	43-230, gnl\|loxAfr1\|scaffold_29620 (3192-3321)
	43-230, gnl\|mm7\|chr19 (6817969-6817840)
	43-230, gnl\|Mm7\|chr19 (6817784-6817968)
	43-230, gnl\|monDom2\|scaffold_1079 (13089-12960)
	43-230, gnl\|panTro1\|chr9 (64736082-64736211)
	43-230, gnl\|rheMac2\|chr14 (10204147-10204019)
	43-230, gnl\|rn3\|chr1 (209830396-209830267)
	43-230, gnl\|tetNig1\|chrUn_random (89861932-89862061)
	43-230, gnl\|xenTro1\|scaffold_684 (252524-252653)

	533-832, gnl\|bosTau2\|chrX (35056095-35056389)
	533-832, gnl\|Hg17\|chr11 (63748381-63747888)
	533-832, gnl\|Mm7\|chr19 (6818381-6818877)

	578-704, gnl\|bosTau2\|chr29 (33344566-33344440)
	578-704, gnl\|Hg17\|chr11 (63748262-63748136)
	578-704, gnl\|Mm7\|chr19 (6818518-6818646)