Non-Coding RNA Search

Ss1.1-Pig2-116G23.5

Sequence:


               
               ATGCCAATATTTTCTAAAATAGTAAACAGGTAATGAAGACATTTTTTTTTCTAATACCTA
TTGTCATGAGATCATTATATTTTATGCTATCTTTAATGATATAAAATTCATGGAATAATT
GTTTCTCCTTAATATTTTTCAAAATCAAGTTTCTATTTTCTCATTTCCCTAGAATCACGT
TCTACTTCTATAAACCATGAGCAGCTCCTTTCTTTTACTTCAAGGCCATATTAAAAACAA
AATCAAAAGACACTGTGAACTACTTTGAAAAAAAATACGTTTCAATGCAGATTTAAAGGG
TTTCTTAAGCTAGAAACAATCTACAGCTATTTATTCATCTACTTCATTAATATTGTTACC
TTTTAGAATATCCAAATAGTTTTTAAAATTTTTGTGTGTAAGCCTAATTATAGCAGAAAT
TTTTACCAAATCTCTGCTCAGTTATGTAAAATTTCTGTATAATCTCTGTGGGAATATAAT
CGTGAGTTTCAAAAAAATTCTCAAGTGTTCAAAGACTTCAGCTTTTGCTTCTTTTGGACA
CCTTAAACCTTATTAACTGTGAATACAAAAGAAAACAATAACAAAGCCCTCTATACACAA
ATACCCAGCATAGGTCATTGTTTAAATAACAAATAGCCAGACCTCAAACGACTGCATTTC
AGTATCTGTGCTGAAAGCATATGCATTGTGACTATTAAATATTGCACATCATTCACTGTA
ATCATTGCTAAAGGGATTGGTCTGTTTTCTTCTTGTGGTTGTATATATCAGGTAAAATTT
TTTTCCAAAGAGCCATGTGTCATATAGAATTACTTTGATACTGAGATAGTAATTTTTATT
TTTTACCCTTGTTACTATTTACTAGTAATAATATAGTACTATAGTAATACTGCTCTAATT
CTCTTCAAAAATGTTGCATCCCTTTTTATAGAATGTTTATACTTCCATAAGGTTTGAGTA
TTCTTTTGTCCCTTCCAGTATCCTAGGATGAAACTAGGTTTTCATGCTTTTTCTTTATCA
TTGGCCCTTCATTCCAAGCACTTTATGCTGTCTGTAATGGGATCTATTTTTGCACTGGAA
TATCTGAGAATTGCAAAACTAGACAAAAGTTTCACAATAGATTTCTAAGTTAAATCATTT
TCATTAAAAGAAAAAAAAATTTTGTATTGTCAATAACTTTATATGAAGTATTAAAGGCAT
ATTTCTATGTTGTAAAGTCACAAAATAAAGCTGTGA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATGCCAATATTTTCTAAAATAGTAAACAGGTAATGAAGACATTTTTTTTTCTAATACCTA
TTGTCATGAGATCATTATATTTTATGCTATCTTTAATGATATAAAATTCATGGAATAATT
GTTTCTCCTTAATATTTTTCAAAATCAAGTTTCTATTTTCTCATTTCCCTAGAATCACGT
TCTACTTCTATAAACCATGAGCAGCTCCTTTCTTTTACTTCAAGGCCATATTAAAAACAA
AATCAAAAGACACTGTGAACTACTTTGAAAAAAAATACGTTTCAATGCAGATTTAAAGGG
TTTCTTAAGCTAGAAACAATCTACAGCTATTTATTCATCTACTTCATTAATATTGTTACC
TTTTAGAATATCCAAATAGTTTTTAAAATTTTTGTGTGTAAGCCTAATTATAGCAGAAAT
TTTTACCAAATCTCTGCTCAGTTATGTAAAATTTCTGTATAATCTCTGTGGGAATATAAT
CGTGAGTTTCAAAAAAATTCTCAAGTGTTCAAAGACTTCAGCTTTTGCTTCTTTTGGACA
CCTTAAACCTTATTAACTGTGAATACAAAAGAAAACAATAACAAAGCCCTCTATACACAA
ATACCCAGCATAGGTCATTGTTTAAATAACAAATAGCCAGACCTCAAACGACTGCATTTC
AGTATCTGTGCTGAAAGCATATGCATTGTGACTATTAAATATTGCACATCATTCACTGTA
ATCATTGCTAAAGGGATTGGTCTGTTTTCTTCTTGTGGTTGTATATATCAGGTAAAATTT
TTTTCCAAAGAGCCATGTGTCATATAGAATTACTTTGATACTGAGATAGTAATTTTTATT
TTTTACCCTTGTTACTATTTACTAGTAATAATATAGTACTATAGTAATACTGCTCTAATT
CTCTTCAAAAATGTTGCATCCCTTTTTATAGAATGTTTATACTTCCATAAGGTTTGAGTA
TTCTTTTGTCCCTTCCAGTATCCTAGGATGAAACTAGGTTTTCATGCTTTTTCTTTATCA
TTGGCCCTTCATTCCAAGCACTTTATGCTGTCTGTAATGGGATCTATTTTTGCACTGGAA
TATCTGAGAATTGCAAAACTAGACAAAAGTTTCACAATAGATTTCTAAGTTAAATCATTT
TCATTAAAAGAAAAAAAAATTTTGTATTGTCAATAACTTTATATGAAGTATTAAAGGCAT
ATTTCTATGTTGTAAAGTCACAAAATAAAGCTGTGA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               840-958, - strand, RNAz p=0.525908

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               840-958, - strand, RNAz p=0.525908

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               2-1236, gnl|bosTau2|chr8 (50627244-50628522)
               

               
               2-1236, gnl|Hg17|chr9 (104624126-104622860)
               

               
               2-1236, gnl|Mm7|chr4 (53045807-53044622)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-1236, gnl|bosTau2|chr8 (50627244-50628522)
               

               
               2-1236, gnl|Hg17|chr9 (104624126-104622860)
               

               
               2-1236, gnl|Mm7|chr4 (53045807-53044622)

Expressed library(ies): 13 entry(ies)

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Expressed library(ies): 13 entry(ies)

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               ret (0.7724)
               

               
               mgp (0.461361)
               

               
               nms (0.427716)
               

               
               sin (0.349895)
               

               
               lin (0.291206)
               

               
               tra (0.246184)
               

               
               fat (0.147427)
               

               
               liv (0.146284)
               

               
               spl (0.143184)
               

               
               pla (0.133672)
               

               
               kid (0.129735)
               

               
               jca (0.11396)
               

               
               cty (0.10408)

Expressed library(ies): 13 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ret (0.7724)
               

               
               mgp (0.461361)
               

               
               nms (0.427716)
               

               
               sin (0.349895)
               

               
               lin (0.291206)
               

               
               tra (0.246184)
               

               
               fat (0.147427)
               

               
               liv (0.146284)
               

               
               spl (0.143184)
               

               
               pla (0.133672)
               

               
               kid (0.129735)
               

               
               jca (0.11396)
               

               
               cty (0.10408)

	2-1236, gnl\|bosTau2\|chr8 (50627244-50628522)
	2-1236, gnl\|Hg17\|chr9 (104624126-104622860)
	2-1236, gnl\|Mm7\|chr4 (53045807-53044622)

	ret (0.7724)
	mgp (0.461361)
	nms (0.427716)
	sin (0.349895)
	lin (0.291206)
	tra (0.246184)
	fat (0.147427)
	liv (0.146284)
	spl (0.143184)
	pla (0.133672)
	kid (0.129735)
	jca (0.11396)
	cty (0.10408)