Ss1.1-Pig2-116H12.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CTACAAGATCCTGGGGCTCCAGTTCAAGCTGTTTGCCTGTGAGGTGTTATATAATATTGC TTTCATGTTCGCCAAGAAGGAGGAATGGAAAAAGGCCGAAGAACATTTAGTGTTGGCTGT GAGCATGAAGTCTGAGCCGAGACATTCCAAAATTGACAAAGCCATGGAAAGCGTTTGGAA ACAGAAGCTGTATGAGCCGGTGGTGATCCCTGTCGGCAGGCTGTTTCGGCCGAATGAGAG GCAAGTGGCTCAGCTGGCCAAGAAGGATTACCTAGGCAAGGCCACGGTCGTGGCGTCTGT GGTGGATCAAGACAGCTTCTCGGGCTTTGCCCCACTGCAGCCACAGGCAGCCGAGCCTCC ACCCAGGCCCAAAACCCCAGAGATCTTCAGGGCTCTGGAAGGAGAAGCCCACCGCGTGCT GTTTGGGTTTATGCCTGAGACACCAGAGGAGCTCCAGGTCATGCCAGGGAACATTGTCTT TGTCCTGAAGAAGTGCAACGATAACTGGGCTACGGTCATGTTCAACGGGAAGAAGGGGCT TGTTCCCTGCAACTACCTTGAACCAGTTGAACTTCGGATCCATTCTCAGCAGCAGCCCCA GGAGGATGCCGCCCCAGAATCGGATATCCCAGCTCCTCCCAGTTCCAG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CTACAAGATCCTGGGGCTCCAGTTCAAGCTGTTTGCCTGTGAGGTGTTATATAATATTGC TTTCATGTTCGCCAAGAAGGAGGAATGGAAAAAGGCCGAAGAACATTTAGTGTTGGCTGT GAGCATGAAGTCTGAGCCGAGACATTCCAAAATTGACAAAGCCATGGAAAGCGTTTGGAA ACAGAAGCTGTATGAGCCGGTGGTGATCCCTGTCGGCAGGCTGTTTCGGCCGAATGAGAG GCAAGTGGCTCAGCTGGCCAAGAAGGATTACCTAGGCAAGGCCACGGTCGTGGCGTCTGT GGTGGATCAAGACAGCTTCTCGGGCTTTGCCCCACTGCAGCCACAGGCAGCCGAGCCTCC ACCCAGGCCCAAAACCCCAGAGATCTTCAGGGCTCTGGAAGGAGAAGCCCACCGCGTGCT GTTTGGGTTTATGCCTGAGACACCAGAGGAGCTCCAGGTCATGCCAGGGAACATTGTCTT TGTCCTGAAGAAGTGCAACGATAACTGGGCTACGGTCATGTTCAACGGGAAGAAGGGGCT TGTTCCCTGCAACTACCTTGAACCAGTTGAACTTCGGATCCATTCTCAGCAGCAGCCCCA GGAGGATGCCGCCCCAGAATCGGATATCCCAGCTCCTCCCAGTTCCAG |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 61-178, + strand, RNAz p=0.666447 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 61-178, + strand, RNAz p=0.666447 |
| Aligned organism(s): 33 entry(ies) | More info |
| Aligned organism(s): 33 entry(ies) | Help | Less info |
| 42-178, gnl|bosTau2|chr16 (46305085-46304949) | |
| 42-178, gnl|canFam2|chr7 (19890681-19890843) | |
| 42-178, gnl|danRer3|chr7 (29641466-29641330) | |
| 42-178, gnl|echTel1|scaffold_315889 (49273-49111) | |
| 42-178, gnl|fr1|chrUn (223506069-223506224) | |
| 42-178, gnl|galGal2|chr8 (7619683-7619835) | |
| 42-178, gnl|hg17|chr1 (180275265-180275427) | |
| 42-178, gnl|Hg17|chr1 (180275415-180275279) | |
| 42-178, gnl|loxAfr1|scaffold_5713 (46967-46805) | |
| 42-178, gnl|mm7|chr1 (152782729-152782574) | |
| 42-178, gnl|Mm7|chr1 (152782584-152782720) | |
| 42-178, gnl|monDom2|scaffold_16 (37536871-37537033) | |
| 42-178, gnl|oryCun1|scaffold_158640 (6022-5860) | |
| 42-178, gnl|panTro1|chr1 (162838931-162839093) | |
| 42-178, gnl|rheMac2|chr1 (187075430-187075268) | |
| 42-178, gnl|rn3|chr13 (67833461-67833306) | |
| 388-532, gnl|bosTau2|chr16 (46300173-46300029) | |
| 388-532, gnl|canFam2|chr7 (19885459-19885621) | |
| 388-532, gnl|danRer3|chr7 (29643583-29643420) | |
| 388-532, gnl|dasNov1|scaffold_505 (149345-149185) | |
| 388-532, gnl|fr1|chrUn (223505356-223505514) | |
| 388-532, gnl|galGal2|chr8 (7617910-7618067) | |
| 388-532, gnl|hg17|chr1 (180267986-180268146) | |
| 388-532, gnl|Hg17|chr1 (180268140-180267996) | |
| 388-532, gnl|loxAfr1|scaffold_5713 (54071-53915) | |
| 388-532, gnl|mm7|chr1 (152791579-152791415) | |
| 388-532, gnl|Mm7|chr1 (152791420-152791563) | |
| 388-532, gnl|monDom2|scaffold_16 (37529610-37529765) | |
| 388-532, gnl|oryCun1|scaffold_158640 (10064-9904) | |
| 388-532, gnl|panTro1|chr1 (162831554-162831714) | |
| 388-532, gnl|rheMac2|chr1 (187081654-187081494) | |
| 388-532, gnl|rn3|chr13 (67840442-67840282) | |
| 388-532, gnl|tetNig1|chrUn_random (134258599-134258757) |
| Aligned organism(s): 33 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 42-178, gnl|bosTau2|chr16 (46305085-46304949) | |
| 42-178, gnl|canFam2|chr7 (19890681-19890843) | |
| 42-178, gnl|danRer3|chr7 (29641466-29641330) | |
| 42-178, gnl|echTel1|scaffold_315889 (49273-49111) | |
| 42-178, gnl|fr1|chrUn (223506069-223506224) | |
| 42-178, gnl|galGal2|chr8 (7619683-7619835) | |
| 42-178, gnl|hg17|chr1 (180275265-180275427) | |
| 42-178, gnl|Hg17|chr1 (180275415-180275279) | |
| 42-178, gnl|loxAfr1|scaffold_5713 (46967-46805) | |
| 42-178, gnl|mm7|chr1 (152782729-152782574) | |
| 42-178, gnl|Mm7|chr1 (152782584-152782720) | |
| 42-178, gnl|monDom2|scaffold_16 (37536871-37537033) | |
| 42-178, gnl|oryCun1|scaffold_158640 (6022-5860) | |
| 42-178, gnl|panTro1|chr1 (162838931-162839093) | |
| 42-178, gnl|rheMac2|chr1 (187075430-187075268) | |
| 42-178, gnl|rn3|chr13 (67833461-67833306) | |
| 388-532, gnl|bosTau2|chr16 (46300173-46300029) | |
| 388-532, gnl|canFam2|chr7 (19885459-19885621) | |
| 388-532, gnl|danRer3|chr7 (29643583-29643420) | |
| 388-532, gnl|dasNov1|scaffold_505 (149345-149185) | |
| 388-532, gnl|fr1|chrUn (223505356-223505514) | |
| 388-532, gnl|galGal2|chr8 (7617910-7618067) | |
| 388-532, gnl|hg17|chr1 (180267986-180268146) | |
| 388-532, gnl|Hg17|chr1 (180268140-180267996) | |
| 388-532, gnl|loxAfr1|scaffold_5713 (54071-53915) | |
| 388-532, gnl|mm7|chr1 (152791579-152791415) | |
| 388-532, gnl|Mm7|chr1 (152791420-152791563) | |
| 388-532, gnl|monDom2|scaffold_16 (37529610-37529765) | |
| 388-532, gnl|oryCun1|scaffold_158640 (10064-9904) | |
| 388-532, gnl|panTro1|chr1 (162831554-162831714) | |
| 388-532, gnl|rheMac2|chr1 (187081654-187081494) | |
| 388-532, gnl|rn3|chr13 (67840442-67840282) | |
| 388-532, gnl|tetNig1|chrUn_random (134258599-134258757) |
| Expressed library(ies): 4 entry(ies) | More info |
| Expressed library(ies): 4 entry(ies) | Help | Less info |
| clu (0.358938) | |
| spl (0.143184) | |
| cbl (0.114797) | |
| jca (0.11396) |
| Expressed library(ies): 4 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| clu (0.358938) | |
| spl (0.143184) | |
| cbl (0.114797) | |
| jca (0.11396) |