Non-Coding RNA Search

Ss1.1-Pig2-116L12.5

Sequence:


               
               CGGGGTCTGGGCTCGTCTCTGCGTCTCTGCTCCGCCACCTTCTCTCCCAGTCTCCCCCCT
CGCCCCCGTGACCACCCTCCCCGGCCCCACCTGCTCACGGTCAGGGTCACCGTGCCGACC
CTGTGCCTGCAGGGAGGAGAAGGAGCGCTGGATCCGGGCCAAGTACGAGCAGAAGCTCTT
CCTGGCCCCGCTGCCGAGCTCGGACGTGCCGCTGGGGCAGCAGCTGCTGCGGGCCGTGGT
GGAGGACGACCTGCGGCTGCTGGTGATGCTCCTGGCCCACGGGTCCAAGGAAGAGGTGAA
CGAGACCTACGGGGACGGGGACGGGCGAACCGCCCTGCACCTCTCCAGCGCCATGGCCAA
CGTCGTCTTCACGCAGCTGCTCATCTGGTACGGGGTGGACGTGCGGAGCCGGGACGCCCG
GGGCCTGACCCCGCTGGCCTACGCACGCCGGGCCGGCAGCCAGGAGTGTGCGGACATCCT
GATCCAGCACGGCTGCCCCAGCGAGGGCTGCGCCTTAGCCCCGGCCCCCAGCCGAGAGCC
CGCCAACGGCACCAACGCGTCCGCGGAGCTGCACCGAAGCCCAAGCATCCTGTAAGGCCC
AGGAAGAGGGCAGAGGGGCTGAAAGGACACCTGGGCCGGGGGCCCCACCTCCCTGCAGGC
CCTGGGGTGGCAGAGACACAGAGACTGAGACGCAGGGACGTGCAGGAGGGAAGGAGGAGA
GGAGAATGGGCAGAGGCAGCGAGAAGAGCCGACGGGGGAGGGGAACGAAGGAGCCGAGAC
AGGCTGCGGCTCAGGACATCGGCGACGGCCCCCTGCCCTACGGCGCCACCCAGAAGGGAC
AGGACCCTTGGGAGGTGCTGGGAGGAGAAGGGGCAGGACCTCGCCCTCCTCCAGACTCCT
ACCTTCTAGCGCCTGCCCCCTGCAGCCTCTCCGGAGACGGAGCCTGGGCGGCAGCGGCTG
GGTGACCTGCAAGTCCTGTGTAAATGTGTACATTGGAATATTTATGTTTGTGTACATATC
TGGTGTGTTTGTGTGTGTGTGTGTGTGTGCGCGTGCGTGACGAGCCAATAAACCAGACTG
CGTGTGGCCTTG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CGGGGTCTGGGCTCGTCTCTGCGTCTCTGCTCCGCCACCTTCTCTCCCAGTCTCCCCCCT
CGCCCCCGTGACCACCCTCCCCGGCCCCACCTGCTCACGGTCAGGGTCACCGTGCCGACC
CTGTGCCTGCAGGGAGGAGAAGGAGCGCTGGATCCGGGCCAAGTACGAGCAGAAGCTCTT
CCTGGCCCCGCTGCCGAGCTCGGACGTGCCGCTGGGGCAGCAGCTGCTGCGGGCCGTGGT
GGAGGACGACCTGCGGCTGCTGGTGATGCTCCTGGCCCACGGGTCCAAGGAAGAGGTGAA
CGAGACCTACGGGGACGGGGACGGGCGAACCGCCCTGCACCTCTCCAGCGCCATGGCCAA
CGTCGTCTTCACGCAGCTGCTCATCTGGTACGGGGTGGACGTGCGGAGCCGGGACGCCCG
GGGCCTGACCCCGCTGGCCTACGCACGCCGGGCCGGCAGCCAGGAGTGTGCGGACATCCT
GATCCAGCACGGCTGCCCCAGCGAGGGCTGCGCCTTAGCCCCGGCCCCCAGCCGAGAGCC
CGCCAACGGCACCAACGCGTCCGCGGAGCTGCACCGAAGCCCAAGCATCCTGTAAGGCCC
AGGAAGAGGGCAGAGGGGCTGAAAGGACACCTGGGCCGGGGGCCCCACCTCCCTGCAGGC
CCTGGGGTGGCAGAGACACAGAGACTGAGACGCAGGGACGTGCAGGAGGGAAGGAGGAGA
GGAGAATGGGCAGAGGCAGCGAGAAGAGCCGACGGGGGAGGGGAACGAAGGAGCCGAGAC
AGGCTGCGGCTCAGGACATCGGCGACGGCCCCCTGCCCTACGGCGCCACCCAGAAGGGAC
AGGACCCTTGGGAGGTGCTGGGAGGAGAAGGGGCAGGACCTCGCCCTCCTCCAGACTCCT
ACCTTCTAGCGCCTGCCCCCTGCAGCCTCTCCGGAGACGGAGCCTGGGCGGCAGCGGCTG
GGTGACCTGCAAGTCCTGTGTAAATGTGTACATTGGAATATTTATGTTTGTGTACATATC
TGGTGTGTTTGTGTGTGTGTGTGTGTGTGCGCGTGCGTGACGAGCCAATAAACCAGACTG
CGTGTGGCCTTG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|62630106|gb|AAX88852.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|62630106|gb|AAX88852.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               120-238, - strand, RNAz p=0.560751

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               120-238, - strand, RNAz p=0.560751

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               120-388, gnl|bosTau2|chr4 (64454831-64454563)
               

               
               120-388, gnl|Hg17|chr7 (150278063-150278331)
               

               
               120-388, gnl|Mm7|chr5 (23541490-23541758)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               120-388, gnl|bosTau2|chr4 (64454831-64454563)
               

               
               120-388, gnl|Hg17|chr7 (150278063-150278331)
               

               
               120-388, gnl|Mm7|chr5 (23541490-23541758)

Expressed library(ies): 4 entry(ies)

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Expressed library(ies): 4 entry(ies)

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               ecc (0.23007)
               

               
               fcc (0.197785)
               

               
               hyp (0.142837)
               

               
               ebs (0.118301)

Expressed library(ies): 4 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ecc (0.23007)
               

               
               fcc (0.197785)
               

               
               hyp (0.142837)
               

               
               ebs (0.118301)

	120-388, gnl\|bosTau2\|chr4 (64454831-64454563)
	120-388, gnl\|Hg17\|chr7 (150278063-150278331)
	120-388, gnl\|Mm7\|chr5 (23541490-23541758)