Non-Coding RNA Search

Ss1.1-Pig2-116O23.5

Sequence:


               
               AAATGTACCCAAAATGACTTTATAACTGTCTGACTCCTCAGAAAAATAACTTAAAATATC
TACCTTATGGATAAAATGTTTTTATACTATGAACCTGTCGCAGCAAGTTTTAAAACTAAC
AATATCTGTGTTTGGTCCACAAGTGCATTAAGTAGTTCTCTTAACTTAATGATGGTAAAT
TAAAGTGATCTTTTTTCAGTAGTCTAATATGCATATCTTTTGATGTTATTTTAGTAGAAA
CAACATAAGAGGAAAAATCAAAATGTCATTTCAGCCAACTCCTTGAATGGCTTAAACTGT
ATAACCCTGGCAACATCAAGCATGTTAGTCTGCAACCTTTTCTAAAATTTTAGAAGTAAT
GGTGAACTGTGTAAAATGATGTGCCTTCCATTGAGAGGATTTGAGAATTGATGTGGATTG
AACATATTTTTCAAAGTGTTATAAATTGTATGTTGTTTTCAGCATATGAAAGTGTTCACT
GGAAACTAATTTTATTGCATTTTTAAATCAGCATTTGTTCAATGCTCAACTTGTGAAGCT
TCTGCACCTGAATTAGAGCAAAGTAAATACACTCAGCTTATAAACCAAATCCTATTCCTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAATGTACCCAAAATGACTTTATAACTGTCTGACTCCTCAGAAAAATAACTTAAAATATC
TACCTTATGGATAAAATGTTTTTATACTATGAACCTGTCGCAGCAAGTTTTAAAACTAAC
AATATCTGTGTTTGGTCCACAAGTGCATTAAGTAGTTCTCTTAACTTAATGATGGTAAAT
TAAAGTGATCTTTTTTCAGTAGTCTAATATGCATATCTTTTGATGTTATTTTAGTAGAAA
CAACATAAGAGGAAAAATCAAAATGTCATTTCAGCCAACTCCTTGAATGGCTTAAACTGT
ATAACCCTGGCAACATCAAGCATGTTAGTCTGCAACCTTTTCTAAAATTTTAGAAGTAAT
GGTGAACTGTGTAAAATGATGTGCCTTCCATTGAGAGGATTTGAGAATTGATGTGGATTG
AACATATTTTTCAAAGTGTTATAAATTGTATGTTGTTTTCAGCATATGAAAGTGTTCACT
GGAAACTAATTTTATTGCATTTTTAAATCAGCATTTGTTCAATGCTCAACTTGTGAAGCT
TCTGCACCTGAATTAGAGCAAAGTAAATACACTCAGCTTATAAACCAAATCCTATTCCTT

Aligned organism(s): 14 entry(ies)

More info

Aligned organism(s): 14 entry(ies)

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               1-591, gnl|bosTau2|chr7 (58240864-58241428)
               

               
               1-591, gnl|canFam2|chr3 (18564275-18563556)
               

               
               1-591, gnl|dasNov1|scaffold_3571 (97747-98485)
               

               
               1-591, gnl|echTel1|scaffold_308286 (30635-29914)
               

               
               1-591, gnl|hg17|chr5 (92980164-92980941)
               

               
               1-591, gnl|Hg17|chr5 (92981004-92980348)
               

               
               1-591, gnl|loxAfr1|scaffold_230718 (727-5)
               

               
               1-591, gnl|mm7|chr13 (75180229-75179530)
               

               
               1-591, gnl|Mm7|chr13 (75179467-75180045)
               

               
               1-591, gnl|monDom2|scaffold_20 (4866005-4865274)
               

               
               1-591, gnl|oryCun1|scaffold_175545 (72938-72248)
               

               
               1-591, gnl|panTro1|chr4 (22263429-22262652)
               

               
               1-591, gnl|rheMac2|chr6 (89852892-89853631)
               

               
               1-591, gnl|rn3|chr2 (5768296-5767626)

Aligned organism(s): 14 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-591, gnl|bosTau2|chr7 (58240864-58241428)
               

               
               1-591, gnl|canFam2|chr3 (18564275-18563556)
               

               
               1-591, gnl|dasNov1|scaffold_3571 (97747-98485)
               

               
               1-591, gnl|echTel1|scaffold_308286 (30635-29914)
               

               
               1-591, gnl|hg17|chr5 (92980164-92980941)
               

               
               1-591, gnl|Hg17|chr5 (92981004-92980348)
               

               
               1-591, gnl|loxAfr1|scaffold_230718 (727-5)
               

               
               1-591, gnl|mm7|chr13 (75180229-75179530)
               

               
               1-591, gnl|Mm7|chr13 (75179467-75180045)
               

               
               1-591, gnl|monDom2|scaffold_20 (4866005-4865274)
               

               
               1-591, gnl|oryCun1|scaffold_175545 (72938-72248)
               

               
               1-591, gnl|panTro1|chr4 (22263429-22262652)
               

               
               1-591, gnl|rheMac2|chr6 (89852892-89853631)
               

               
               1-591, gnl|rn3|chr2 (5768296-5767626)

Expressed library(ies): 2 entry(ies)

More info

Expressed library(ies): 2 entry(ies)

Help | Less info


               
               fcc (0.197785)
               

               
               fco (0.157208)

Expressed library(ies): 2 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fcc (0.197785)
               

               
               fco (0.157208)

	1-591, gnl\|bosTau2\|chr7 (58240864-58241428)
	1-591, gnl\|canFam2\|chr3 (18564275-18563556)
	1-591, gnl\|dasNov1\|scaffold_3571 (97747-98485)
	1-591, gnl\|echTel1\|scaffold_308286 (30635-29914)
	1-591, gnl\|hg17\|chr5 (92980164-92980941)
	1-591, gnl\|Hg17\|chr5 (92981004-92980348)
	1-591, gnl\|loxAfr1\|scaffold_230718 (727-5)
	1-591, gnl\|mm7\|chr13 (75180229-75179530)
	1-591, gnl\|Mm7\|chr13 (75179467-75180045)
	1-591, gnl\|monDom2\|scaffold_20 (4866005-4865274)
	1-591, gnl\|oryCun1\|scaffold_175545 (72938-72248)
	1-591, gnl\|panTro1\|chr4 (22263429-22262652)
	1-591, gnl\|rheMac2\|chr6 (89852892-89853631)
	1-591, gnl\|rn3\|chr2 (5768296-5767626)