Ss1.1-Pig2-117I07.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| ATGGTGGCGGAGGAGCCCATCACGCCGCACAGCAAGCCGGTCCTGGTCAAGGCCGTGGCC ATGACACCAGTGCCGCTCTTCAGCAAGCAGAGGCACGGCTGCAGGCCCTTCTGCGAGGTC TACGTGGGGGACGAGCGCGTGGCCACCACGTCCCAGGAGTACGACAAGATGAGGGATTTC AGAGTCGAGGATGGCAAGGCGGTCATCCCCCTGGACGTGGCGGTGCAGGGCGACGTGCTC GTCGTCATCTACCACGCCAGGTCCACCCTGGGAGGGAGGCTGCAGGCCAAGATGGCATCC ATGAAGATGTTTCAGATCCAGTTCCACACGGGGTTCGTGCCTCGGAACGCAACCACTGTG AAATTCGCAAAGTATGACCTGGACGCCTGTGACATTCAGGAGAAGTTCCCGGACCTGTTC CAGGTGCACCTGGAGGTGGAGGTGGAGCCCAGAGACAGGCCCAGCCGCGAGGCACCCCCC TGGGAGAGTGCCAGCATGCGGGGGCTGAACCCCAAAATCCTGTTTTCC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| ATGGTGGCGGAGGAGCCCATCACGCCGCACAGCAAGCCGGTCCTGGTCAAGGCCGTGGCC ATGACACCAGTGCCGCTCTTCAGCAAGCAGAGGCACGGCTGCAGGCCCTTCTGCGAGGTC TACGTGGGGGACGAGCGCGTGGCCACCACGTCCCAGGAGTACGACAAGATGAGGGATTTC AGAGTCGAGGATGGCAAGGCGGTCATCCCCCTGGACGTGGCGGTGCAGGGCGACGTGCTC GTCGTCATCTACCACGCCAGGTCCACCCTGGGAGGGAGGCTGCAGGCCAAGATGGCATCC ATGAAGATGTTTCAGATCCAGTTCCACACGGGGTTCGTGCCTCGGAACGCAACCACTGTG AAATTCGCAAAGTATGACCTGGACGCCTGTGACATTCAGGAGAAGTTCCCGGACCTGTTC CAGGTGCACCTGGAGGTGGAGGTGGAGCCCAGAGACAGGCCCAGCCGCGAGGCACCCCCC TGGGAGAGTGCCAGCATGCGGGGGCTGAACCCCAAAATCCTGTTTTCC |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 372-490, + strand, RNAz p=0.88795 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 372-490, + strand, RNAz p=0.88795 |
| Aligned organism(s): 22 entry(ies) | More info |
| Aligned organism(s): 22 entry(ies) | Help | Less info |
| 1-174, gnl|bosTau2|chr6 (63639925-63640098) | |
| 1-174, gnl|Hg17|chr4 (861405-861232) | |
| 1-174, gnl|Mm7|chr5 (107773300-107773127) | |
| 372-528, gnl|bosTau2|chr6 (63644116-63644272) | |
| 372-528, gnl|canFam2|chr3 (94446978-94446772) | |
| 372-528, gnl|danRer3|chrUn (128760413-128760613) | |
| 372-528, gnl|dasNov1|scaffold_3925 (11499-11699) | |
| 372-528, gnl|echTel1|scaffold_166353 (1337-1538) | |
| 372-528, gnl|fr1|chrUn (166670965-166671172) | |
| 372-528, gnl|galGal2|chrZ (25279029-25279230) | |
| 372-528, gnl|hg17|chr4 (854319-854526) | |
| 372-528, gnl|Hg17|chr4 (854522-854366) | |
| 372-528, gnl|loxAfr1|scaffold_78873 (4712-4511) | |
| 372-528, gnl|mm7|chr5 (107766267-107766468) | |
| 372-528, gnl|Mm7|chr5 (107766464-107766308) | |
| 372-528, gnl|monDom2|scaffold_10 (49541457-49541250) | |
| 372-528, gnl|oryCun1|scaffold_91130 (3343-3548) | |
| 372-528, gnl|panTro1|chr3 (910304-910511) | |
| 372-528, gnl|rheMac2|chr1 (3100930-3100723) | |
| 372-528, gnl|rn3|chr14 (1675880-1675679) | |
| 372-528, gnl|tetNig1|chr12 (5420859-5420660) | |
| 372-528, gnl|xenTro1|scaffold_868 (402450-402650) |
| Aligned organism(s): 22 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-174, gnl|bosTau2|chr6 (63639925-63640098) | |
| 1-174, gnl|Hg17|chr4 (861405-861232) | |
| 1-174, gnl|Mm7|chr5 (107773300-107773127) | |
| 372-528, gnl|bosTau2|chr6 (63644116-63644272) | |
| 372-528, gnl|canFam2|chr3 (94446978-94446772) | |
| 372-528, gnl|danRer3|chrUn (128760413-128760613) | |
| 372-528, gnl|dasNov1|scaffold_3925 (11499-11699) | |
| 372-528, gnl|echTel1|scaffold_166353 (1337-1538) | |
| 372-528, gnl|fr1|chrUn (166670965-166671172) | |
| 372-528, gnl|galGal2|chrZ (25279029-25279230) | |
| 372-528, gnl|hg17|chr4 (854319-854526) | |
| 372-528, gnl|Hg17|chr4 (854522-854366) | |
| 372-528, gnl|loxAfr1|scaffold_78873 (4712-4511) | |
| 372-528, gnl|mm7|chr5 (107766267-107766468) | |
| 372-528, gnl|Mm7|chr5 (107766464-107766308) | |
| 372-528, gnl|monDom2|scaffold_10 (49541457-49541250) | |
| 372-528, gnl|oryCun1|scaffold_91130 (3343-3548) | |
| 372-528, gnl|panTro1|chr3 (910304-910511) | |
| 372-528, gnl|rheMac2|chr1 (3100930-3100723) | |
| 372-528, gnl|rn3|chr14 (1675880-1675679) | |
| 372-528, gnl|tetNig1|chr12 (5420859-5420660) | |
| 372-528, gnl|xenTro1|scaffold_868 (402450-402650) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cty (0.10408) |