Ss1.1-Pig2-117J10.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TGGGCTGTAGCCGCCCCCATGATCCTCTCCCTGCAAGCCTTCCAGAAAAACTTGCCCAAG AGCACCGTGGACAAGCTGGAAAAGGAGAAGATGCCCCGGAAGGGAGGGCGGTGGTGGTTT TCCTGGCGACGCAGGGACTTGCCGGCCAAGGAGGGCAGCGCCCAGAGCGAGAAAACCACA GCAAGGGAGCAGCGGGTGGAGAAGCCCGGAGCCCCGAGCAGTGAGGACGATGTCCTCGAC AGCCCCGTCATCCTGGAGGCCCCCTCCCTGCCCGCTTCACCGCCAGCCCACAGTCCTGCC TACAAGAAGTCCCTCCGTCTCTCCTCCAGTCAGATCCGGCGCCTGAACCTGCAAGAAGGT GCCAATGAAGTGGTCTTCAGCGTGACCACCCAGTACCAGGGCACCTGCCGCTGTAGAGCC ACCATCTACCTGTGGAAGTGGGACGACAAGGTGGTCATCTCTGACATCGATGGCACCATC ACCAAGTCTGACGCTCTGGGACACATCCTGCCCCAGCTGGGGAAAGACTGGACACACCAG GGGCATCACTAGCCTCTTCCACAAAATCCACCTAAACGGGTACAAGTTCCTGTACTGCTC GGCCCGGGCCATCGGCATGGCTGACCTCACCAAGGGGTACCTGCAGTG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TGGGCTGTAGCCGCCCCCATGATCCTCTCCCTGCAAGCCTTCCAGAAAAACTTGCCCAAG AGCACCGTGGACAAGCTGGAAAAGGAGAAGATGCCCCGGAAGGGAGGGCGGTGGTGGTTT TCCTGGCGACGCAGGGACTTGCCGGCCAAGGAGGGCAGCGCCCAGAGCGAGAAAACCACA GCAAGGGAGCAGCGGGTGGAGAAGCCCGGAGCCCCGAGCAGTGAGGACGATGTCCTCGAC AGCCCCGTCATCCTGGAGGCCCCCTCCCTGCCCGCTTCACCGCCAGCCCACAGTCCTGCC TACAAGAAGTCCCTCCGTCTCTCCTCCAGTCAGATCCGGCGCCTGAACCTGCAAGAAGGT GCCAATGAAGTGGTCTTCAGCGTGACCACCCAGTACCAGGGCACCTGCCGCTGTAGAGCC ACCATCTACCTGTGGAAGTGGGACGACAAGGTGGTCATCTCTGACATCGATGGCACCATC ACCAAGTCTGACGCTCTGGGACACATCCTGCCCCAGCTGGGGAAAGACTGGACACACCAG GGGCATCACTAGCCTCTTCCACAAAATCCACCTAAACGGGTACAAGTTCCTGTACTGCTC GGCCCGGGCCATCGGCATGGCTGACCTCACCAAGGGGTACCTGCAGTG |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 53-154, - strand, RNAz p=0.595726 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 53-154, - strand, RNAz p=0.595726 |
| Aligned organism(s): 24 entry(ies) | More info |
| Aligned organism(s): 24 entry(ies) | Help | Less info |
| 53-154, gnl|bosTau2|chr13 (51559309-51559412) | |
| 53-154, gnl|Hg17|chr20 (39416690-39416792) | |
| 53-154, gnl|Mm7|chr2 (160642539-160642645) | |
| 198-336, gnl|bosTau2|chr13 (51560253-51560391) | |
| 198-336, gnl|Hg17|chr20 (39417950-39418088) | |
| 198-336, gnl|Mm7|chr2 (160643453-160643591) | |
| 341-487, gnl|bosTau2|chr11 (65564493-65564639) | |
| 341-487, gnl|canFam2|chr17 (11431941-11432116) | |
| 341-487, gnl|danRer3|chr17 (33921900-33921723) | |
| 341-487, gnl|dasNov1|scaffold_47985 (6028-5877) | |
| 341-487, gnl|echTel1|scaffold_315059 (72096-72271) | |
| 341-487, gnl|fr1|chrUn (244109048-244108874) | |
| 341-487, gnl|galGal2|chr3 (95712864-95713035) | |
| 341-487, gnl|hg17|chr2 (11895129-11895304) | |
| 341-487, gnl|Hg17|chr2 (11895151-11895297) | |
| 341-487, gnl|loxAfr1|scaffold_11428 (16291-16137) | |
| 341-487, gnl|mm7|chr12 (16601919-16601733) | |
| 341-487, gnl|Mm7|chr12 (16601881-16601735) | |
| 341-487, gnl|oryCun1|scaffold_175391 (580-753) | |
| 341-487, gnl|panTro1|chr12 (12617220-12617395) | |
| 341-487, gnl|rheMac2|chr13 (11870930-11871105) | |
| 341-487, gnl|rn3|chr6 (40266959-40266781) | |
| 341-487, gnl|tetNig1|chr5 (3024856-3024699) | |
| 341-487, gnl|xenTro1|scaffold_688 (638574-638412) |
| Aligned organism(s): 24 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 53-154, gnl|bosTau2|chr13 (51559309-51559412) | |
| 53-154, gnl|Hg17|chr20 (39416690-39416792) | |
| 53-154, gnl|Mm7|chr2 (160642539-160642645) | |
| 198-336, gnl|bosTau2|chr13 (51560253-51560391) | |
| 198-336, gnl|Hg17|chr20 (39417950-39418088) | |
| 198-336, gnl|Mm7|chr2 (160643453-160643591) | |
| 341-487, gnl|bosTau2|chr11 (65564493-65564639) | |
| 341-487, gnl|canFam2|chr17 (11431941-11432116) | |
| 341-487, gnl|danRer3|chr17 (33921900-33921723) | |
| 341-487, gnl|dasNov1|scaffold_47985 (6028-5877) | |
| 341-487, gnl|echTel1|scaffold_315059 (72096-72271) | |
| 341-487, gnl|fr1|chrUn (244109048-244108874) | |
| 341-487, gnl|galGal2|chr3 (95712864-95713035) | |
| 341-487, gnl|hg17|chr2 (11895129-11895304) | |
| 341-487, gnl|Hg17|chr2 (11895151-11895297) | |
| 341-487, gnl|loxAfr1|scaffold_11428 (16291-16137) | |
| 341-487, gnl|mm7|chr12 (16601919-16601733) | |
| 341-487, gnl|Mm7|chr12 (16601881-16601735) | |
| 341-487, gnl|oryCun1|scaffold_175391 (580-753) | |
| 341-487, gnl|panTro1|chr12 (12617220-12617395) | |
| 341-487, gnl|rheMac2|chr13 (11870930-11871105) | |
| 341-487, gnl|rn3|chr6 (40266959-40266781) | |
| 341-487, gnl|tetNig1|chr5 (3024856-3024699) | |
| 341-487, gnl|xenTro1|scaffold_688 (638574-638412) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| nmm (0.132802) |