Non-Coding RNA Search

Ss1.1-Pig2-117L12.5

Sequence:


               
               GACACTGCTTTCTTGCAAGAACCACAAGAAAGCTAAAGCCATTAAGCTGATCTTGCTGGT
GGTCATTGTGTTTTTCCTCTTCTGGACACCCTACAACATTATGATTTTCTTAGAGACACT
CAATCGCTTTGACCTCTTTCCCACCTGTGACATGCAGAAGAATCTGAGGTTGGCCCTCAG
TGTGACAGAGACAATTGCATTTACTCACTGCTGCCTCAATCCCCTTATCTACGCATTTGC
TGGAGAGAAGTTCAGAAGATACCTTTACCACCTGTATAGGAAATGCCTGGCTATCCTGTG
CGGCCACCCTGTCACTCTTTCCTCCTCCCTATCTGAATCACAAAGGAGCAGGCGGGAAAG
TATTCTGAGCAGCAATTTTACTCATTACACCAATGATGGAGATGCATCCATCCTTCTCTG
AAGGGATCCCCAAAGCCTTGTCCCTGCAGCTAGCCTGCAGTTCTGGACTTTGATCCTGAA
TAATAAGGACAGATTTTTAAATTTACTACATGCAAGAAACAATGGAACCAATACTCCAAA
GCAACCCTAAAGTTTTTTGAGAATTGTGCTCAAAATTTGAATGATAAAGGGTAGGCATGC
CTCTTACTGCAAATAGCAGGACGTTTTTGTTTACAAATGACAAAATTTCAACTCAGACTA
ATTTAACCTGAAAGGAGGCAGTATCATTCACATTGG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GACACTGCTTTCTTGCAAGAACCACAAGAAAGCTAAAGCCATTAAGCTGATCTTGCTGGT
GGTCATTGTGTTTTTCCTCTTCTGGACACCCTACAACATTATGATTTTCTTAGAGACACT
CAATCGCTTTGACCTCTTTCCCACCTGTGACATGCAGAAGAATCTGAGGTTGGCCCTCAG
TGTGACAGAGACAATTGCATTTACTCACTGCTGCCTCAATCCCCTTATCTACGCATTTGC
TGGAGAGAAGTTCAGAAGATACCTTTACCACCTGTATAGGAAATGCCTGGCTATCCTGTG
CGGCCACCCTGTCACTCTTTCCTCCTCCCTATCTGAATCACAAAGGAGCAGGCGGGAAAG
TATTCTGAGCAGCAATTTTACTCATTACACCAATGATGGAGATGCATCCATCCTTCTCTG
AAGGGATCCCCAAAGCCTTGTCCCTGCAGCTAGCCTGCAGTTCTGGACTTTGATCCTGAA
TAATAAGGACAGATTTTTAAATTTACTACATGCAAGAAACAATGGAACCAATACTCCAAA
GCAACCCTAAAGTTTTTTGAGAATTGTGCTCAAAATTTGAATGATAAAGGGTAGGCATGC
CTCTTACTGCAAATAGCAGGACGTTTTTGTTTACAAATGACAAAATTTCAACTCAGACTA
ATTTAACCTGAAAGGAGGCAGTATCATTCACATTGG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q6Y3I9_PANTR

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q6Y3I9_PANTR

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               1-120, - strand, RNAz p=0.526295
               

               
               355-474, - strand, RNAz p=0.894677

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-120, - strand, RNAz p=0.526295
               

               
               355-474, - strand, RNAz p=0.894677

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-694, gnl|bosTau2|chr22 (11378408-11377709)
               

               
               1-694, gnl|Hg17|chr3 (39282357-39281627)
               

               
               1-694, gnl|Mm7|chr9 (119747579-119746898)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-694, gnl|bosTau2|chr22 (11378408-11377709)
               

               
               1-694, gnl|Hg17|chr3 (39282357-39281627)
               

               
               1-694, gnl|Mm7|chr9 (119747579-119746898)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               cbl (0.45919)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cbl (0.45919)

	1-120, - strand, RNAz p=0.526295
	355-474, - strand, RNAz p=0.894677

	1-694, gnl\|bosTau2\|chr22 (11378408-11377709)
	1-694, gnl\|Hg17\|chr3 (39282357-39281627)
	1-694, gnl\|Mm7\|chr9 (119747579-119746898)