Non-Coding RNA Search

Ss1.1-Pig2-117P14.5

Sequence:


               
               TTACAAGGGCCGGCGGGTCCTGGAGTTCCGCACCCTGGGAGACTTCATCAAAGGCCAGAA
CTTTATCCAGCACCTGCTGCCCCAGCCGTGGGCGGGCACGGGCCACGTGGTGTACAATGG
TTCCCTGTTCTACAACAAGTACCAGAGCAACGTGGTGGTCAAGTACCACTTCCGCTCACG
TTCCGTGCTGGTGCAGAGGAGCCTCCCGGGGGCCGGCTACAACAACACCTTCCCTTACTC
CTGGGGCGGCTTCTCGGACATGGACTTCATGGTGGACGAGAGCGGGCTCTGGGCCGTGTA
CACCACCAACCAGAACGCGGGCAACATCGTGGTCAGCCGGCTGGACCCTCACACCCTGGA
GGTCGTGCGGTCCTGGGACACCGGCTACCCCAAGCGCAGCGCCGGCGAGGCCTTCATGAT
CTGCGGCGTGCTCTACGTCACCAACTCCCACCTGGCCGGGGCCAAGGTCTACTTCGCCTA
CTTCACCAACACGTCCAGCTACGAGTACACGGACGTGCCCTTCCACAACCAGTACTCCCA
CATCTCCATGCTGGATTACAACCCCCGGGAGCGGGCCCTCTACACCTGGAACAACGGCCA
CCAGGTGCTCTACAATGTCACGCTCTTCCACGTCATCAGCACCGCTGGGGACCCCTAAGC
GCTGCCACGCGAGGGCGAGGGCTGCGGGGTGGGATGCCTGTGTCCCTCCAAGTTCATCTC
TCTGTCTCTGCCGTGCCCTCTTGCTCTCTCCCCGTCTCCCCTCCTGTGCTGTTTTTTCTC
TCCCCGAGTGCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTACAAGGGCCGGCGGGTCCTGGAGTTCCGCACCCTGGGAGACTTCATCAAAGGCCAGAA
CTTTATCCAGCACCTGCTGCCCCAGCCGTGGGCGGGCACGGGCCACGTGGTGTACAATGG
TTCCCTGTTCTACAACAAGTACCAGAGCAACGTGGTGGTCAAGTACCACTTCCGCTCACG
TTCCGTGCTGGTGCAGAGGAGCCTCCCGGGGGCCGGCTACAACAACACCTTCCCTTACTC
CTGGGGCGGCTTCTCGGACATGGACTTCATGGTGGACGAGAGCGGGCTCTGGGCCGTGTA
CACCACCAACCAGAACGCGGGCAACATCGTGGTCAGCCGGCTGGACCCTCACACCCTGGA
GGTCGTGCGGTCCTGGGACACCGGCTACCCCAAGCGCAGCGCCGGCGAGGCCTTCATGAT
CTGCGGCGTGCTCTACGTCACCAACTCCCACCTGGCCGGGGCCAAGGTCTACTTCGCCTA
CTTCACCAACACGTCCAGCTACGAGTACACGGACGTGCCCTTCCACAACCAGTACTCCCA
CATCTCCATGCTGGATTACAACCCCCGGGAGCGGGCCCTCTACACCTGGAACAACGGCCA
CCAGGTGCTCTACAATGTCACGCTCTTCCACGTCATCAGCACCGCTGGGGACCCCTAAGC
GCTGCCACGCGAGGGCGAGGGCTGCGGGGTGGGATGCCTGTGTCCCTCCAAGTTCATCTC
TCTGTCTCTGCCGTGCCCTCTTGCTCTCTCCCCGTCTCCCCTCCTGTGCTGTTTTTTCTC
TCCCCGAGTGCC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|55846824|gb|AAV67416.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|55846824|gb|AAV67416.1|

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               121-240, - strand, RNAz p=0.585406
               

               
               441-560, - strand, RNAz p=0.818571

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               121-240, - strand, RNAz p=0.585406
               

               
               441-560, - strand, RNAz p=0.818571

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               1-785, gnl|bosTau2|chr7 (10785417-10784623)
               

               
               1-785, gnl|Hg17|chr19 (9826519-9825746)
               

               
               1-785, gnl|Mm7|chr9 (20538938-20538180)
               


               
               17-637, gnl|bosTau2|chr11 (86498760-86498140)
               

               
               17-637, gnl|Hg17|chr9 (135237331-135237951)
               

               
               17-637, gnl|Mm7|chr2 (28236401-28237021)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-785, gnl|bosTau2|chr7 (10785417-10784623)
               

               
               1-785, gnl|Hg17|chr19 (9826519-9825746)
               

               
               1-785, gnl|Mm7|chr9 (20538938-20538180)
               


               
               17-637, gnl|bosTau2|chr11 (86498760-86498140)
               

               
               17-637, gnl|Hg17|chr9 (135237331-135237951)
               

               
               17-637, gnl|Mm7|chr2 (28236401-28237021)

Expressed library(ies): 4 entry(ies)

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Expressed library(ies): 4 entry(ies)

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               fce (0.271592)
               

               
               cov (0.132153)
               

               
               ebs (0.118301)
               

               
               ecc (0.115035)

Expressed library(ies): 4 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fce (0.271592)
               

               
               cov (0.132153)
               

               
               ebs (0.118301)
               

               
               ecc (0.115035)

	121-240, - strand, RNAz p=0.585406
	441-560, - strand, RNAz p=0.818571

	1-785, gnl\|bosTau2\|chr7 (10785417-10784623)
	1-785, gnl\|Hg17\|chr19 (9826519-9825746)
	1-785, gnl\|Mm7\|chr9 (20538938-20538180)

	17-637, gnl\|bosTau2\|chr11 (86498760-86498140)
	17-637, gnl\|Hg17\|chr9 (135237331-135237951)
	17-637, gnl\|Mm7\|chr2 (28236401-28237021)