Non-Coding RNA Search

Ss1.1-Pig2-118C23.5

Sequence:


               
               TGCTGTCCGCCCCTCCCTCTGGCAGCTAGCAGGGCAATAGGTGGGGGAGTCGCGGACTGT
GAGGACCAAGGTAGGGCTCCGGCCCTGCCCTGGAGGGGCTCCGTAGGCATTCCTTGGTGC
TCTCTGAGTGCAGCTGACGTCCTGCCCCCTGTCTGGAGCAGACGCCGTGTGCATGTGTGT
GCGTGCCTGTCCAATGTATATTGTGTCTTAGCTTCCATTTTAAAAATTGTTCTGTACAGA
GAGATGCAGCAGGGGCGGGAGGGCAGAGTGGGCAGAGGGAAGCCGCCCCACTCCCAGCAC
TGGGGGTCTGGGGTGGGAGCAAGAGCGCTGCAAAGGGTCTGGCCCGGCCCAGGCCCCCCC
TTGGGCTCAGCACGAAAGGGCTTTCAATGAATTAAGTGAAAAACTTTTTTACAAAAATGC
AAAAATCAAAGCTCCGAACGTATTGGGAATAAACTATGAACTTGCAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGCTGTCCGCCCCTCCCTCTGGCAGCTAGCAGGGCAATAGGTGGGGGAGTCGCGGACTGT
GAGGACCAAGGTAGGGCTCCGGCCCTGCCCTGGAGGGGCTCCGTAGGCATTCCTTGGTGC
TCTCTGAGTGCAGCTGACGTCCTGCCCCCTGTCTGGAGCAGACGCCGTGTGCATGTGTGT
GCGTGCCTGTCCAATGTATATTGTGTCTTAGCTTCCATTTTAAAAATTGTTCTGTACAGA
GAGATGCAGCAGGGGCGGGAGGGCAGAGTGGGCAGAGGGAAGCCGCCCCACTCCCAGCAC
TGGGGGTCTGGGGTGGGAGCAAGAGCGCTGCAAAGGGTCTGGCCCGGCCCAGGCCCCCCC
TTGGGCTCAGCACGAAAGGGCTTTCAATGAATTAAGTGAAAAACTTTTTTACAAAAATGC
AAAAATCAAAGCTCCGAACGTATTGGGAATAAACTATGAACTTGCAAAAAAAAAAAAAAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               312-423, + strand, RNAz p=0.713402

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               312-423, + strand, RNAz p=0.713402

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of BC053362, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of BC053362, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               11-464, gnl|bosTau2|chr19 (49711166-49710705)
               

               
               11-464, gnl|Hg17|chr17 (71333002-71333473)
               

               
               11-464, gnl|Mm7|chr11 (116169817-116170258)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               11-464, gnl|bosTau2|chr19 (49711166-49710705)
               

               
               11-464, gnl|Hg17|chr17 (71333002-71333473)
               

               
               11-464, gnl|Mm7|chr11 (116169817-116170258)

Expressed library(ies): 4 entry(ies)

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Expressed library(ies): 4 entry(ies)

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               mas (0.210305)
               

               
               cag (0.151194)
               

               
               hyp (0.142837)
               

               
               eru (0.120048)

Expressed library(ies): 4 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               mas (0.210305)
               

               
               cag (0.151194)
               

               
               hyp (0.142837)
               

               
               eru (0.120048)

	11-464, gnl\|bosTau2\|chr19 (49711166-49710705)
	11-464, gnl\|Hg17\|chr17 (71333002-71333473)
	11-464, gnl\|Mm7\|chr11 (116169817-116170258)