Non-Coding RNA Search

Ss1.1-Pig2-118G22.5

Sequence:


               
               TCGCCATGTCCTTGCAGCTGGACCGCAGGGCCGCCTGGAACATGCTGGGGCCGTGCCTCT
TTGCCATCGTGGTTATGGTCACCATGTGGGTGTACCGCTGCGGGCGCCGACGCCGCTGCT
ACCCGCCCTCCTGGCAGCGCTGGGTCTTCTACCTCCTGCCTGGCATCGCCATGGCCTCTG
TGGCCATTGCCATCTACACCGCCATGATGACCAGCGACAACTATTACTACACCCACAGCA
TCTGGCACATGCTGCTGGCTGGCAGCGCTGCGTTCCTGCTGCCACCAAGGGACCAACACA
CCGAGCCCTGGGCCTGCTCCCAGAAGCTCACCTGCCACTATGATATCTGCAGGAACCGCC
AGGAAGAGCTGTACACAGTGACATGACGTGGCCCGCTTGGGGACACCTGCGGCTTTGATG
ATTTCTCCGGCCAGGGGCAGGACCAGGGGAGAGGTACCCTGTCCAGATGGATTTCCAGCC
GAATAAAATTGCACTGCTGTGCTCTCACTTCCTCCTCCTCCGGAGGCAAGGCCACACCCC
CAGCTCCCTTATGCCTACTGGCTGCCAGCTACCCGGTCCCTCTGCAGGGCCCAGCGGGTG
TCTGCAGTGGCTCCTGAGGCCTGGCCCTGGCTGCCTGGAGACCACAGGTACCAAGTGGGG
AAGCCCCTGTGGTCTGCTGGCCTGGAGATGGTTGGAGGGAAACGTAGAGTAAGATGGCTG
TGTCGCCCTGTTCCTGTGTGAGGCTGTGCTCTGGCACTTAGGCTGGTAGCTGTGCCGCCG
CGTGGCTCCTTGACCCCTTGTGCCCCAGCAGGATGCCCCCTGCTGATGCATTTGCCACGG
GAAGGGGCGATCGTGCCAAGGGAGCTGATGGCACTGGGTGGCCTAAGGGCTAGCTGCCAC
GAGGGCATGGGG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TCGCCATGTCCTTGCAGCTGGACCGCAGGGCCGCCTGGAACATGCTGGGGCCGTGCCTCT
TTGCCATCGTGGTTATGGTCACCATGTGGGTGTACCGCTGCGGGCGCCGACGCCGCTGCT
ACCCGCCCTCCTGGCAGCGCTGGGTCTTCTACCTCCTGCCTGGCATCGCCATGGCCTCTG
TGGCCATTGCCATCTACACCGCCATGATGACCAGCGACAACTATTACTACACCCACAGCA
TCTGGCACATGCTGCTGGCTGGCAGCGCTGCGTTCCTGCTGCCACCAAGGGACCAACACA
CCGAGCCCTGGGCCTGCTCCCAGAAGCTCACCTGCCACTATGATATCTGCAGGAACCGCC
AGGAAGAGCTGTACACAGTGACATGACGTGGCCCGCTTGGGGACACCTGCGGCTTTGATG
ATTTCTCCGGCCAGGGGCAGGACCAGGGGAGAGGTACCCTGTCCAGATGGATTTCCAGCC
GAATAAAATTGCACTGCTGTGCTCTCACTTCCTCCTCCTCCGGAGGCAAGGCCACACCCC
CAGCTCCCTTATGCCTACTGGCTGCCAGCTACCCGGTCCCTCTGCAGGGCCCAGCGGGTG
TCTGCAGTGGCTCCTGAGGCCTGGCCCTGGCTGCCTGGAGACCACAGGTACCAAGTGGGG
AAGCCCCTGTGGTCTGCTGGCCTGGAGATGGTTGGAGGGAAACGTAGAGTAAGATGGCTG
TGTCGCCCTGTTCCTGTGTGAGGCTGTGCTCTGGCACTTAGGCTGGTAGCTGTGCCGCCG
CGTGGCTCCTTGACCCCTTGTGCCCCAGCAGGATGCCCCCTGCTGATGCATTTGCCACGG
GAAGGGGCGATCGTGCCAAGGGAGCTGATGGCACTGGGTGGCCTAAGGGCTAGCTGCCAC
GAGGGCATGGGG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|13279098|gb|AAH04276.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|13279098|gb|AAH04276.1|

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               113-232, - strand, RNAz p=0.719573
               

               
               502-654, - strand, RNAz p=0.999084

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               113-232, - strand, RNAz p=0.719573
               

               
               502-654, - strand, RNAz p=0.999084

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               76-776, gnl|bosTau2|chr25 (1486558-1487259)
               

               
               76-776, gnl|Hg17|chr16 (362300-361589)
               

               
               76-776, gnl|Mm7|chr17 (24305162-24305801)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               76-776, gnl|bosTau2|chr25 (1486558-1487259)
               

               
               76-776, gnl|Hg17|chr16 (362300-361589)
               

               
               76-776, gnl|Mm7|chr17 (24305162-24305801)

Expressed library(ies): 7 entry(ies)

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Expressed library(ies): 7 entry(ies)

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               cje (0.330469)
               

               
               fbs (0.175346)
               

               
               nco (0.161734)
               

               
               cst (0.140036)
               

               
               ute (0.132784)
               

               
               cly (0.120642)
               

               
               ebs (0.118301)

Expressed library(ies): 7 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cje (0.330469)
               

               
               fbs (0.175346)
               

               
               nco (0.161734)
               

               
               cst (0.140036)
               

               
               ute (0.132784)
               

               
               cly (0.120642)
               

               
               ebs (0.118301)

	113-232, - strand, RNAz p=0.719573
	502-654, - strand, RNAz p=0.999084

	76-776, gnl\|bosTau2\|chr25 (1486558-1487259)
	76-776, gnl\|Hg17\|chr16 (362300-361589)
	76-776, gnl\|Mm7\|chr17 (24305162-24305801)

	cje (0.330469)
	fbs (0.175346)
	nco (0.161734)
	cst (0.140036)
	ute (0.132784)
	cly (0.120642)
	ebs (0.118301)