Non-Coding RNA Search

Ss1.1-Pig2-118I24.5

Sequence:


               
               GGAGATGAATGGGAAGCTGTTTGATGAGCTCACAGCCTCCTACAAGCTGGAAAAGCAGCA
GGAGCAGCAGAAGGCTCGGGAACGTCAGGAGCTGTGGCAAGGCCTGGAGGAGCTACGGCT
ACGCCGGTTACAGGGGACCCAGGGGGCCAAAGAGGCCCCGCTCCAGCGGCCTACACCCCC
GGTGGCCACCAGTGGAGGTCAGAGCTAGAGACCCCGGGAGGGAGGAGCTAGCCCCAGCGC
GATCAGCCCTCCCTCCTCCCTTCTGCGCAGGGGCCCAGAGAGATGCAAAGCTGCTCCTGG
CCTTGCCCGAGTGGGCTCGCCTGGCCCCGTGTGGGCAGTTTCCGCTGGGGGGAGAGAGGA
GAGATGGTGGTCCTGGCCACAGAACTCTCAGGCCCTCCTGGCAAGATTTGACCAGGGCAA
GCTTGACCAGGAAGCTGCCATTGGGGATCTGCCTCTGCCCCACAAAGCTGGGCTCCAGAA
CTGCAGGCAGGTTCCCACCCCCTGCTCCCAGCCTAAGGCAAGGGGACTCAGCCCCTTGCC
TGCCCCGCCTTGTGCCAGCGCGAGGTCCTTCCTCACCCCACCATGGGATCCATGGTCTAT
TTATTCTCCCCCAGCTCACCTGCAACACAGACATTCTCCTGGGCCTGGGCACCCTCCTTC
CCTCCCTTCCCTTGCCCTGTACATCCTTGTTCCCTTTTTATTTATTGGGCAGGGGGAGGG
GTGAGGGCACAGGCAGAAGATTCCCCGTGTCCTGGGGCAAGGGGGGGGTCACAGTAACCA
CGGTCTCCCCTTTCCCTGGCTGGGGGTAGATTTAATAAAGAGAGAAACTCGAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGAGATGAATGGGAAGCTGTTTGATGAGCTCACAGCCTCCTACAAGCTGGAAAAGCAGCA
GGAGCAGCAGAAGGCTCGGGAACGTCAGGAGCTGTGGCAAGGCCTGGAGGAGCTACGGCT
ACGCCGGTTACAGGGGACCCAGGGGGCCAAAGAGGCCCCGCTCCAGCGGCCTACACCCCC
GGTGGCCACCAGTGGAGGTCAGAGCTAGAGACCCCGGGAGGGAGGAGCTAGCCCCAGCGC
GATCAGCCCTCCCTCCTCCCTTCTGCGCAGGGGCCCAGAGAGATGCAAAGCTGCTCCTGG
CCTTGCCCGAGTGGGCTCGCCTGGCCCCGTGTGGGCAGTTTCCGCTGGGGGGAGAGAGGA
GAGATGGTGGTCCTGGCCACAGAACTCTCAGGCCCTCCTGGCAAGATTTGACCAGGGCAA
GCTTGACCAGGAAGCTGCCATTGGGGATCTGCCTCTGCCCCACAAAGCTGGGCTCCAGAA
CTGCAGGCAGGTTCCCACCCCCTGCTCCCAGCCTAAGGCAAGGGGACTCAGCCCCTTGCC
TGCCCCGCCTTGTGCCAGCGCGAGGTCCTTCCTCACCCCACCATGGGATCCATGGTCTAT
TTATTCTCCCCCAGCTCACCTGCAACACAGACATTCTCCTGGGCCTGGGCACCCTCCTTC
CCTCCCTTCCCTTGCCCTGTACATCCTTGTTCCCTTTTTATTTATTGGGCAGGGGGAGGG
GTGAGGGCACAGGCAGAAGATTCCCCGTGTCCTGGGGCAAGGGGGGGGTCACAGTAACCA
CGGTCTCCCCTTTCCCTGGCTGGGGGTAGATTTAATAAAGAGAGAAACTCGAAAAAAAAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               425-814, - strand, RNAz p=0.998116

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               425-814, - strand, RNAz p=0.998116

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               510-582, - strand, RNAmicro p=0.996919

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               510-582, - strand, RNAmicro p=0.996919

Similar Transcript(s): 6 entry(ies)

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Similar Transcript(s): 6 entry(ies)

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               428-756, BovGen_02822 normal cattle brain Bos taurus cDNA clone 
(gb|CO874497.1|), blast E-value=0, identity=92.22% 
               

               
               545-814, UMC-pd3ov2-001-b11 Oviduct gilt D3 of estrous cycle pd3ov Sus 
(gb|CO990118.1|), blast E-value=0, identity=95.57% 
               

               
               428-756, 1154861 MARC 7BOV Bos taurus cDNA 3', mRNA sequence (gb|DN275750.1|), 
blast E-value=0, identity=92.22% 
               

               
               428-756, 1240021 MARC 7BOV Bos taurus cDNA 5', mRNA sequence (gb|DN285964.1|), 
blast E-value=0, identity=92.22% 
               

               
               428-756, 1252105 MARC 7BOV Bos taurus cDNA 3', mRNA sequence (gb|DN514932.1|), 
blast E-value=0, identity=92.22% 
               

               
               428-756, LB0188.CR_C03 GC_BGC-18 Bos taurus cDNA clone IMAGE (gb|EE226175.1|), 
blast E-value=0, identity=92.22%

Similar Transcript(s): 6 entry(ies)

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PigEST conread start position and end position of sequence similarity to another annotated EST (NCBI dbEST),
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript


               
               428-756, BovGen_02822 normal cattle brain Bos taurus cDNA clone 
(gb|CO874497.1|), blast E-value=0, identity=92.22% 
               

               
               545-814, UMC-pd3ov2-001-b11 Oviduct gilt D3 of estrous cycle pd3ov Sus 
(gb|CO990118.1|), blast E-value=0, identity=95.57% 
               

               
               428-756, 1154861 MARC 7BOV Bos taurus cDNA 3', mRNA sequence (gb|DN275750.1|), 
blast E-value=0, identity=92.22% 
               

               
               428-756, 1240021 MARC 7BOV Bos taurus cDNA 5', mRNA sequence (gb|DN285964.1|), 
blast E-value=0, identity=92.22% 
               

               
               428-756, 1252105 MARC 7BOV Bos taurus cDNA 3', mRNA sequence (gb|DN514932.1|), 
blast E-value=0, identity=92.22% 
               

               
               428-756, LB0188.CR_C03 GC_BGC-18 Bos taurus cDNA clone IMAGE (gb|EE226175.1|), 
blast E-value=0, identity=92.22%

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               61-830, gnl|bosTau2|chr29 (34102392-34103180)
               

               
               61-830, gnl|Hg17|chr11 (64457745-64458521)
               

               
               61-830, gnl|Mm7|chr19 (6123337-6122573)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               61-830, gnl|bosTau2|chr29 (34102392-34103180)
               

               
               61-830, gnl|Hg17|chr11 (64457745-64458521)
               

               
               61-830, gnl|Mm7|chr19 (6123337-6122573)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               nje (0.16592)
               

               
               hyp (0.142837)
               

               
               med (0.116252)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nje (0.16592)
               

               
               hyp (0.142837)
               

               
               med (0.116252)

	428-756, BovGen_02822 normal cattle brain Bos taurus cDNA clone (gb\|CO874497.1\|), blast E-value=0, identity=92.22%
	545-814, UMC-pd3ov2-001-b11 Oviduct gilt D3 of estrous cycle pd3ov Sus (gb\|CO990118.1\|), blast E-value=0, identity=95.57%
	428-756, 1154861 MARC 7BOV Bos taurus cDNA 3', mRNA sequence (gb\|DN275750.1\|), blast E-value=0, identity=92.22%
	428-756, 1240021 MARC 7BOV Bos taurus cDNA 5', mRNA sequence (gb\|DN285964.1\|), blast E-value=0, identity=92.22%
	428-756, 1252105 MARC 7BOV Bos taurus cDNA 3', mRNA sequence (gb\|DN514932.1\|), blast E-value=0, identity=92.22%
	428-756, LB0188.CR_C03 GC_BGC-18 Bos taurus cDNA clone IMAGE (gb\|EE226175.1\|), blast E-value=0, identity=92.22%

	61-830, gnl\|bosTau2\|chr29 (34102392-34103180)
	61-830, gnl\|Hg17\|chr11 (64457745-64458521)
	61-830, gnl\|Mm7\|chr19 (6123337-6122573)