Non-Coding RNA Search

Ss1.1-Pig2-118M15.5

Sequence:


               
               AAACATATGAAGAGAGCGTGCCTGTGTCCAGTTACCAGCAAGCAGGGAATCGCGCGGCTG
TGAAGAGGAAGATCGCGCGGCTGGGGATCAACATGCTGCTGAAGATGATATTTGTGGACA
ACTTCGTCCATGCGGACCTTCACCCTGGGAACATCCTGGTCCAGGGTGCTGATGGTCTTT
CCAAGAGCCAGGAGGCGCGGCTGCAGCAGGTGGATGTCTGTGATGCTCTGGCTGTGGCTG
TGACACCTGCCCAGTGCCCACTGCGCCTGGTGCTGCTGGATGCTGGCATTGTGGCCGAGC
TGCAGGCCACTGACTTGAGGAACTTCCGGGCAGTGTTCATGGCCGTGGCAATGGGGCAGG
GCCAAAGAGTGGCTGAGCTCATCCTGCACCACGCGCGGGCCCACGAGTGCAAGGATGTGG
AGGGATTTAAGGCCGAGATGGCCAGGCTGGTGACCCAGGCCAGGAAGAACACCATCACCC
TGGAAAAGCTTCAAGTTTCCAGCCTCCTCTCGAATGTCTTTAAGTTGCTGGTGACTCATA
AGGTAAAGCTGGAGAGCAACTTCGCCTCAATTGTCTTTGCCATCATGGTCTTGGAGGGGC
TTGGCCGCTCACTGGATCCTAAACTGGACATCCTGGAGGCAGCAAAGCCCTTCCTTCTGC
AAGGCCTAGCGACCTGCTGACTGCGGCTCTGGGGGTGCAGCAGGCCTTGGCTCAACCAGA
GGCCACTGCCAGCAGCCTCTCCTGTGGCAGCTTGAACATCCTAGAGTTGGCATGTGTGGA
AGGCCTGCCATTGCCTTTCACTCTGATCTGGTTTCAGGCGTCTGTTTTGAAAGCTTTGGG
TTACTTGGGTGGGAAGTAAAGGGAAGGTGGGGTCCTATCCATTCGGTCGTGGGAGCTGGG
CCGGGTGTCAGGGAGCCTGTTTCAAGGAGAATATTCTCTGGAGGAGGACGAATAAACTTA
GTTCTTTTGTAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAACATATGAAGAGAGCGTGCCTGTGTCCAGTTACCAGCAAGCAGGGAATCGCGCGGCTG
TGAAGAGGAAGATCGCGCGGCTGGGGATCAACATGCTGCTGAAGATGATATTTGTGGACA
ACTTCGTCCATGCGGACCTTCACCCTGGGAACATCCTGGTCCAGGGTGCTGATGGTCTTT
CCAAGAGCCAGGAGGCGCGGCTGCAGCAGGTGGATGTCTGTGATGCTCTGGCTGTGGCTG
TGACACCTGCCCAGTGCCCACTGCGCCTGGTGCTGCTGGATGCTGGCATTGTGGCCGAGC
TGCAGGCCACTGACTTGAGGAACTTCCGGGCAGTGTTCATGGCCGTGGCAATGGGGCAGG
GCCAAAGAGTGGCTGAGCTCATCCTGCACCACGCGCGGGCCCACGAGTGCAAGGATGTGG
AGGGATTTAAGGCCGAGATGGCCAGGCTGGTGACCCAGGCCAGGAAGAACACCATCACCC
TGGAAAAGCTTCAAGTTTCCAGCCTCCTCTCGAATGTCTTTAAGTTGCTGGTGACTCATA
AGGTAAAGCTGGAGAGCAACTTCGCCTCAATTGTCTTTGCCATCATGGTCTTGGAGGGGC
TTGGCCGCTCACTGGATCCTAAACTGGACATCCTGGAGGCAGCAAAGCCCTTCCTTCTGC
AAGGCCTAGCGACCTGCTGACTGCGGCTCTGGGGGTGCAGCAGGCCTTGGCTCAACCAGA
GGCCACTGCCAGCAGCCTCTCCTGTGGCAGCTTGAACATCCTAGAGTTGGCATGTGTGGA
AGGCCTGCCATTGCCTTTCACTCTGATCTGGTTTCAGGCGTCTGTTTTGAAAGCTTTGGG
TTACTTGGGTGGGAAGTAAAGGGAAGGTGGGGTCCTATCCATTCGGTCGTGGGAGCTGGG
CCGGGTGTCAGGGAGCCTGTTTCAAGGAGAATATTCTCTGGAGGAGGACGAATAAACTTA
GTTCTTTTGTAAAAAAAAAAAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|5441947|gb|AAD43192.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|5441947|gb|AAD43192.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               541-659, + strand, RNAz p=0.938628

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               541-659, + strand, RNAz p=0.938628

Aligned organism(s): 19 entry(ies)

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Aligned organism(s): 19 entry(ies)

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               107-360, gnl|bosTau2|chr27 (12053787-12054040)
               

               
               107-360, gnl|canFam2|chr16 (11318702-11318434)
               

               
               107-360, gnl|danRer3|chr25 (1049784-1049529)
               

               
               107-360, gnl|echTel1|scaffold_280687 (41941-41673)
               

               
               107-360, gnl|fr1|chrUn (66710904-66711190)
               

               
               107-360, gnl|galGal2|chr1 (53585333-53585600)
               

               
               107-360, gnl|hg17|chr7 (139839966-139840234)
               

               
               107-360, gnl|Hg17|chr7 (139839973-139840226)
               

               
               107-360, gnl|mm7|chr6 (39513829-39514096)
               

               
               107-360, gnl|Mm7|chr6 (39513835-39514088)
               

               
               107-360, gnl|monDom2|scaffold_22 (1438343-1438109)
               

               
               107-360, gnl|panTro1|chr6 (142599600-142599868)
               

               
               107-360, gnl|rheMac2|chr3 (178171918-178172186)
               

               
               107-360, gnl|rn3|chr4 (67366661-67366928)
               

               
               107-360, gnl|tetNig1|chr13 (8987825-8988116)
               

               
               107-360, gnl|xenTro1|scaffold_835 (145192-144927)
               


               
               541-970, gnl|bosTau2|chr27 (12061318-12061738)
               

               
               541-970, gnl|Hg17|chr7 (139847645-139848089)
               

               
               541-970, gnl|Mm7|chr6 (39517392-39517774)

Aligned organism(s): 19 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               107-360, gnl|bosTau2|chr27 (12053787-12054040)
               

               
               107-360, gnl|canFam2|chr16 (11318702-11318434)
               

               
               107-360, gnl|danRer3|chr25 (1049784-1049529)
               

               
               107-360, gnl|echTel1|scaffold_280687 (41941-41673)
               

               
               107-360, gnl|fr1|chrUn (66710904-66711190)
               

               
               107-360, gnl|galGal2|chr1 (53585333-53585600)
               

               
               107-360, gnl|hg17|chr7 (139839966-139840234)
               

               
               107-360, gnl|Hg17|chr7 (139839973-139840226)
               

               
               107-360, gnl|mm7|chr6 (39513829-39514096)
               

               
               107-360, gnl|Mm7|chr6 (39513835-39514088)
               

               
               107-360, gnl|monDom2|scaffold_22 (1438343-1438109)
               

               
               107-360, gnl|panTro1|chr6 (142599600-142599868)
               

               
               107-360, gnl|rheMac2|chr3 (178171918-178172186)
               

               
               107-360, gnl|rn3|chr4 (67366661-67366928)
               

               
               107-360, gnl|tetNig1|chr13 (8987825-8988116)
               

               
               107-360, gnl|xenTro1|scaffold_835 (145192-144927)
               


               
               541-970, gnl|bosTau2|chr27 (12061318-12061738)
               

               
               541-970, gnl|Hg17|chr7 (139847645-139848089)
               

               
               541-970, gnl|Mm7|chr6 (39517392-39517774)

Expressed library(ies): 5 entry(ies)

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Expressed library(ies): 5 entry(ies)

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               nca (0.136874)
               

               
               pla (0.133672)
               

               
               ecc (0.115035)
               

               
               nbm (0.0993246)
               

               
               jej (0.0989218)

Expressed library(ies): 5 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nca (0.136874)
               

               
               pla (0.133672)
               

               
               ecc (0.115035)
               

               
               nbm (0.0993246)
               

               
               jej (0.0989218)

	107-360, gnl\|bosTau2\|chr27 (12053787-12054040)
	107-360, gnl\|canFam2\|chr16 (11318702-11318434)
	107-360, gnl\|danRer3\|chr25 (1049784-1049529)
	107-360, gnl\|echTel1\|scaffold_280687 (41941-41673)
	107-360, gnl\|fr1\|chrUn (66710904-66711190)
	107-360, gnl\|galGal2\|chr1 (53585333-53585600)
	107-360, gnl\|hg17\|chr7 (139839966-139840234)
	107-360, gnl\|Hg17\|chr7 (139839973-139840226)
	107-360, gnl\|mm7\|chr6 (39513829-39514096)
	107-360, gnl\|Mm7\|chr6 (39513835-39514088)
	107-360, gnl\|monDom2\|scaffold_22 (1438343-1438109)
	107-360, gnl\|panTro1\|chr6 (142599600-142599868)
	107-360, gnl\|rheMac2\|chr3 (178171918-178172186)
	107-360, gnl\|rn3\|chr4 (67366661-67366928)
	107-360, gnl\|tetNig1\|chr13 (8987825-8988116)
	107-360, gnl\|xenTro1\|scaffold_835 (145192-144927)

	541-970, gnl\|bosTau2\|chr27 (12061318-12061738)
	541-970, gnl\|Hg17\|chr7 (139847645-139848089)
	541-970, gnl\|Mm7\|chr6 (39517392-39517774)

	nca (0.136874)
	pla (0.133672)
	ecc (0.115035)
	nbm (0.0993246)
	jej (0.0989218)