Non-Coding RNA Search

Ss1.1-Pig2-118N08.5

Sequence:


               
               CTGGGCAGTGCTGTGCTGCGCCTCCACCCTTTTCACCGTGCTCACGTACCTGGTGGACAT
GCGGCGCTTCAGCTACCCAGAGCGGCCCATCATCTTCCTGTCGGGCTGCTACACTGCAGT
AGCCGTGGCCTACATCGCCGGCTTCCTGCTGGAGGACCGGGTGGTGTGTAACGACAAGTT
CTCCGAGGACGGGGCGCGTACAGTGGCGCAGGGCACCAAGAAGGAGGGCTGCACCATCCT
CTTCATGATGCTCTACTTCTTCAGCATGGCCAGCTCCATCTGGTGGGTGATCTTGTCGCT
CACCTGGTTCCTGGCAGCCGGCATGAAGTGGGGCCACGAAGCCATCGAGGCTAACTCGCA
GTACTTTCACCTGGCCGCCTGGGCTGTGCCGGCCATCAAAACCATCACCATCCTGGCGCT
GGGCCAGGTGGACGGCGATGTGCTGAGCGGGGTGTGCTTCGTGGGGCTCAACAACGTGGA
CGCGCTGCGGGGCTTCGTGCTGGCGCCACTCTTCGTGTACCTGTTCATCGGCACGTCTTT
CCTACTGGCCGGCTTCGTGTCCCTCTTCCGTATTCGCACCATCATGAAGCATGATGGCAC
CAAGACAGAGAAGCTGGAGAAGCTTATGGTGCGCATCGGTGTCTTCAGCGTACTTTACAC
GGTGCCAGCTACTATTGTCATCGCCTGCTACTTCTATGAGCAGGCCTTCCGGGACCAGTG
GGAACGCAGCTGGGTGGCCCAGAGCTGCAAGAGCTATGCCATCCCCTGCCCCCACCTCCA
GGCGGGTGGAGGCGCCCCGCCGCACCCGCCCATGAGCCCTGACTTTACAGTCTTCATGAT
CAAGTACCTTATGACGCTGATCGTGGGTATCACGTCAGGCTTCTGGATCTGGTCGGGCAA
GACCCTCAACTC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTGGGCAGTGCTGTGCTGCGCCTCCACCCTTTTCACCGTGCTCACGTACCTGGTGGACAT
GCGGCGCTTCAGCTACCCAGAGCGGCCCATCATCTTCCTGTCGGGCTGCTACACTGCAGT
AGCCGTGGCCTACATCGCCGGCTTCCTGCTGGAGGACCGGGTGGTGTGTAACGACAAGTT
CTCCGAGGACGGGGCGCGTACAGTGGCGCAGGGCACCAAGAAGGAGGGCTGCACCATCCT
CTTCATGATGCTCTACTTCTTCAGCATGGCCAGCTCCATCTGGTGGGTGATCTTGTCGCT
CACCTGGTTCCTGGCAGCCGGCATGAAGTGGGGCCACGAAGCCATCGAGGCTAACTCGCA
GTACTTTCACCTGGCCGCCTGGGCTGTGCCGGCCATCAAAACCATCACCATCCTGGCGCT
GGGCCAGGTGGACGGCGATGTGCTGAGCGGGGTGTGCTTCGTGGGGCTCAACAACGTGGA
CGCGCTGCGGGGCTTCGTGCTGGCGCCACTCTTCGTGTACCTGTTCATCGGCACGTCTTT
CCTACTGGCCGGCTTCGTGTCCCTCTTCCGTATTCGCACCATCATGAAGCATGATGGCAC
CAAGACAGAGAAGCTGGAGAAGCTTATGGTGCGCATCGGTGTCTTCAGCGTACTTTACAC
GGTGCCAGCTACTATTGTCATCGCCTGCTACTTCTATGAGCAGGCCTTCCGGGACCAGTG
GGAACGCAGCTGGGTGGCCCAGAGCTGCAAGAGCTATGCCATCCCCTGCCCCCACCTCCA
GGCGGGTGGAGGCGCCCCGCCGCACCCGCCCATGAGCCCTGACTTTACAGTCTTCATGAT
CAAGTACCTTATGACGCTGATCGTGGGTATCACGTCAGGCTTCTGGATCTGGTCGGGCAA
GACCCTCAACTC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61884549|ref|XP_602576.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61884549|ref|XP_602576.1|

Predicted RNA structure(s): 3 entry(ies)

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Predicted RNA structure(s): 3 entry(ies)

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               1-199, - strand, RNAz p=0.995418
               

               
               230-759, - strand, RNAz p=0.77918
               

               
               240-359, - strand, RNAz p=0.957838

Predicted RNA structure(s): 3 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-199, - strand, RNAz p=0.995418
               

               
               230-759, - strand, RNAz p=0.77918
               

               
               240-359, - strand, RNAz p=0.957838

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               1-912, gnl|bosTau2|chr19 (37705434-37704544)
               

               
               1-912, gnl|Hg17|chr17 (39991332-39992222)
               

               
               1-912, gnl|Mm7|chr11 (102714537-102715427)
               


               
               230-703, gnl|bosTau2|chr13 (15026849-15026370)
               

               
               230-703, gnl|Hg17|chr10 (35969178-35968699)
               

               
               230-703, gnl|Mm7|chr18 (9417853-9418332)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-912, gnl|bosTau2|chr19 (37705434-37704544)
               

               
               1-912, gnl|Hg17|chr17 (39991332-39992222)
               

               
               1-912, gnl|Mm7|chr11 (102714537-102715427)
               


               
               230-703, gnl|bosTau2|chr13 (15026849-15026370)
               

               
               230-703, gnl|Hg17|chr10 (35969178-35968699)
               

               
               230-703, gnl|Mm7|chr18 (9417853-9418332)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               nmm (0.132802)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nmm (0.132802)

	1-199, - strand, RNAz p=0.995418
	230-759, - strand, RNAz p=0.77918
	240-359, - strand, RNAz p=0.957838

	1-912, gnl\|bosTau2\|chr19 (37705434-37704544)
	1-912, gnl\|Hg17\|chr17 (39991332-39992222)
	1-912, gnl\|Mm7\|chr11 (102714537-102715427)

	230-703, gnl\|bosTau2\|chr13 (15026849-15026370)
	230-703, gnl\|Hg17\|chr10 (35969178-35968699)
	230-703, gnl\|Mm7\|chr18 (9417853-9418332)