Ss1.1-Pig2-119D22.5
|
GTGACTGCGGGCACGGGCGCTGTCAACGTGCTGATGACCGGCATCGCCATTTTCGTGGTG
GAGCTACTGGGGAGAAGGTTCCTGCTCCTCCTGGGCTTCTCCATCTGCTTTACCGCCTGC
TGCGTGTTGACAGCCGCCCTGGCTCTGCAGGACACAATATCCTGGATGCCCTACCTCAGC
ATCGTCTGCGTCATCTCCTACGTCATAGGCCATGCCCTTGGGCCCAGTCCCATCCCAGCA
CTGTTCATCACTGAGATCTTCCTGCAGTCCTCCCGGCCTGCCGCCTACATGGTGGGGGGC
AGTGTCCACTGGCTCTCCAACTTCACCGTGGGCTTGATCTTCCCATTCATTCAAGTGGGC
CTCGGCGCTTACTGCTTCATCATTTTTGCCGTGATATGTCTTCTCACCACCATCTACATC
TTCCTGGTTGTTCCTGAGACCAAGTCCAAAACCTTCATAGAAATCAATCAGATCTTCACC
AAGATGAATAAAGTGTCAGAGGTGCACCCAGAAAAGGAGCTGAAGGACTTTCCGCCCTCT
GCTGTGGGGCTGTAACTCGAGAAGAGGTGCCTGTGCATTGGATCTGCCTGGCGCTTCCAT
CCTGGGCTGTGAATCCAGAACTAGGACAAGTCCAGTGTGGAAGGCAGGCCCCGCTGGACT
GTCTGAAGGGCTTCCATGCAGTTCTCAAAGCCTTTCAGACTCACCCATCACCAACCCTCA
GGCATGGCGGGCAGCTGTCCCTCAGCCATGGTGGGTCAGCCGTTGTGTGGCTCCTGGTAA
CACCAGCTTTTATAACGAAAATTGTTACCGTGATGGCAAGATGGAAGGAATCGAACATGG
CCGAAGAAATGAACTCTGCTCCGATCCCACGGTCTTCCGGGGCCACGGGAACCTGGTCAG
CGTGGAATCCATCCTCTTGTCAGATCCATCTCCAGAAACACCAGTCCTGGAAAGTGTGAT
TCACCTGTAGCCATGTTTAGGAAGCTGGGAAGCAGGTCCCTATGGAGACTTTAACCAAGT
CAGAGATTATTGATCCCAAATTTTATTATTAGGGGACTGTAGAATTGCCTCTTTATACTC
AATAAAACATATATAATCACTTAT
|
Blue-coloured subsequences are predicted RNA structures by RNAz
|
GTGACTGCGGGCACGGGCGCTGTCAACGTGCTGATGACCGGCATCGCCATTTTCGTGGTG
GAGCTACTGGGGAGAAGGTTCCTGCTCCTCCTGGGCTTCTCCATCTGCTTTACCGCCTGC
TGCGTGTTGACAGCCGCCCTGGCTCTGCAGGACACAATATCCTGGATGCCCTACCTCAGC
ATCGTCTGCGTCATCTCCTACGTCATAGGCCATGCCCTTGGGCCCAGTCCCATCCCAGCA
CTGTTCATCACTGAGATCTTCCTGCAGTCCTCCCGGCCTGCCGCCTACATGGTGGGGGGC
AGTGTCCACTGGCTCTCCAACTTCACCGTGGGCTTGATCTTCCCATTCATTCAAGTGGGC
CTCGGCGCTTACTGCTTCATCATTTTTGCCGTGATATGTCTTCTCACCACCATCTACATC
TTCCTGGTTGTTCCTGAGACCAAGTCCAAAACCTTCATAGAAATCAATCAGATCTTCACC
AAGATGAATAAAGTGTCAGAGGTGCACCCAGAAAAGGAGCTGAAGGACTTTCCGCCCTCT
GCTGTGGGGCTGTAACTCGAGAAGAGGTGCCTGTGCATTGGATCTGCCTGGCGCTTCCAT
CCTGGGCTGTGAATCCAGAACTAGGACAAGTCCAGTGTGGAAGGCAGGCCCCGCTGGACT
GTCTGAAGGGCTTCCATGCAGTTCTCAAAGCCTTTCAGACTCACCCATCACCAACCCTCA
GGCATGGCGGGCAGCTGTCCCTCAGCCATGGTGGGTCAGCCGTTGTGTGGCTCCTGGTAA
CACCAGCTTTTATAACGAAAATTGTTACCGTGATGGCAAGATGGAAGGAATCGAACATGG
CCGAAGAAATGAACTCTGCTCCGATCCCACGGTCTTCCGGGGCCACGGGAACCTGGTCAG
CGTGGAATCCATCCTCTTGTCAGATCCATCTCCAGAAACACCAGTCCTGGAAAGTGTGAT
TCACCTGTAGCCATGTTTAGGAAGCTGGGAAGCAGGTCCCTATGGAGACTTTAACCAAGT
CAGAGATTATTGATCCCAAATTTTATTATTAGGGGACTGTAGAATTGCCTCTTTATACTC
AATAAAACATATATAATCACTTAT
|
|
gi|14486594|gb|AAK63203.1| |
Protein identifier
|
gi|14486594|gb|AAK63203.1| |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
|
49-151, gnl|bosTau2|chr16 (31673642-31673540) |
|
49-151, gnl|canFam2|chr5 (65398727-65398850) |
|
49-151, gnl|danRer3|chr23 (31138795-31138680) |
|
49-151, gnl|dasNov1|scaffold_38758 (1693-1828) |
|
49-151, gnl|echTel1|scaffold_105824 (671-533) |
|
49-151, gnl|fr1|chrUn (285762887-285763019) |
|
49-151, gnl|galGal2|chr21 (3092721-3092855) |
|
49-151, gnl|hg17|chr1 (9004465-9004600) |
|
49-151, gnl|Hg17|chr1 (9033254-9033152) |
|
49-151, gnl|loxAfr1|scaffold_50917 (3257-3125) |
|
49-151, gnl|mm7|chr4 (149152846-149152719) |
|
49-151, gnl|Mm7|chr4 (149130301-149130403) |
|
49-151, gnl|monDom2|scaffold_148 (621190-621062) |
|
49-151, gnl|panTro1|chr1 (9006820-9006955) |
|
49-151, gnl|rheMac2|chr1 (12062161-12062296) |
|
49-151, gnl|rn3|chr5 (167322750-167322633) |
|
49-151, gnl|tetNig1|chr9 (2813970-2814092) |
| |
|
352-1102, gnl|bosTau2|chr16 (31672496-31671728) |
|
352-1102, gnl|Hg17|chr1 (9032117-9031276) |
|
352-1102, gnl|Mm7|chr4 (149132564-149133294) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
49-151, gnl|bosTau2|chr16 (31673642-31673540) |
|
49-151, gnl|canFam2|chr5 (65398727-65398850) |
|
49-151, gnl|danRer3|chr23 (31138795-31138680) |
|
49-151, gnl|dasNov1|scaffold_38758 (1693-1828) |
|
49-151, gnl|echTel1|scaffold_105824 (671-533) |
|
49-151, gnl|fr1|chrUn (285762887-285763019) |
|
49-151, gnl|galGal2|chr21 (3092721-3092855) |
|
49-151, gnl|hg17|chr1 (9004465-9004600) |
|
49-151, gnl|Hg17|chr1 (9033254-9033152) |
|
49-151, gnl|loxAfr1|scaffold_50917 (3257-3125) |
|
49-151, gnl|mm7|chr4 (149152846-149152719) |
|
49-151, gnl|Mm7|chr4 (149130301-149130403) |
|
49-151, gnl|monDom2|scaffold_148 (621190-621062) |
|
49-151, gnl|panTro1|chr1 (9006820-9006955) |
|
49-151, gnl|rheMac2|chr1 (12062161-12062296) |
|
49-151, gnl|rn3|chr5 (167322750-167322633) |
|
49-151, gnl|tetNig1|chr9 (2813970-2814092) |
| |
|
352-1102, gnl|bosTau2|chr16 (31672496-31671728) |
|
352-1102, gnl|Hg17|chr1 (9032117-9031276) |
|
352-1102, gnl|Mm7|chr4 (149132564-149133294) |
|
cje (0.165235) |
|
cki (0.165235) |
|
che (0.136314) |
|
ssp (0.13552) |
|
ute (0.132784) |
|
ebs (0.118301) |
|
ecc (0.115035) |
|
jej (0.0989218) |
|
cje (0.165235) |
|
cki (0.165235) |
|
che (0.136314) |
|
ssp (0.13552) |
|
ute (0.132784) |
|
ebs (0.118301) |
|
ecc (0.115035) |
|
jej (0.0989218) |
