Ss1.1-Pig2-119J04.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AGCATATCACGCTGGGCAGCAGCCCTGCCTCCAGGCCCTCCTGGGGGTGGGTGATGAGGA AGTCCACGTCGTGGCCCTGCAACTTCCCCCTCCGGAAGCCGCCGGCCAGCGTTACGGTGG CCCCCGGCAGGACCTGCCCCACAGCTGCCTCCACCACCTGCTGCAGGGCCTCCACTTCTG ACCGCAGGATCAGGGCGCTCAGGTCCTGGTAGTGCTGCAGGCCTGCTTTCTGCTGCTTGG TCAGTCTCTGGGGCTGCTCTCGGAGGTCGTCCAGCGTCCGCAGCCCCTCCTGGTACCACT GATCGGCAGTCCGTACCCCGACCCCGAAGATCTGGGTGAAGAGCTTCATGGTCTGGTACC TCTCGGAGAGCCGGACTCTCTCCACCTCCTCGCACACTCCGTGTTCCAGCAGCTCCTGGA TGACCCTGCGGGAGTGCTCTCCGAAGTGGGGCAGCCCCTGCAGCTGGCTCAGGGCCGTGA CGGGGCTGGGAAGGGCCTTGAGCACCGAGGCTGCTCTGCAGAAGGAGACGTGGCGGCCCT TACTGCCGTCGAAGTCTGCTGCCTCCGCCAGCGTCTCCAGAGCCTCCGAGAGGCTGGCAT TGTGGTGCGTGAGGGGTGTGGGACGCTGGCAGGCATAGGGCAGCATCCACACTGGACTTG GCAGCTCCTCCCTGGGCACAGCCACCTCCAGGCGGTGCCGGCGCTCCACGGGGACAGGCT GGCCAGCCGCCATGCTCTCCGTGAACCAGCTTACGTCTAACAGCGCCGGGTGGCTGCAAC CCGGGGGAAGGG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AGCATATCACGCTGGGCAGCAGCCCTGCCTCCAGGCCCTCCTGGGGGTGGGTGATGAGGA AGTCCACGTCGTGGCCCTGCAACTTCCCCCTCCGGAAGCCGCCGGCCAGCGTTACGGTGG CCCCCGGCAGGACCTGCCCCACAGCTGCCTCCACCACCTGCTGCAGGGCCTCCACTTCTG ACCGCAGGATCAGGGCGCTCAGGTCCTGGTAGTGCTGCAGGCCTGCTTTCTGCTGCTTGG TCAGTCTCTGGGGCTGCTCTCGGAGGTCGTCCAGCGTCCGCAGCCCCTCCTGGTACCACT GATCGGCAGTCCGTACCCCGACCCCGAAGATCTGGGTGAAGAGCTTCATGGTCTGGTACC TCTCGGAGAGCCGGACTCTCTCCACCTCCTCGCACACTCCGTGTTCCAGCAGCTCCTGGA TGACCCTGCGGGAGTGCTCTCCGAAGTGGGGCAGCCCCTGCAGCTGGCTCAGGGCCGTGA CGGGGCTGGGAAGGGCCTTGAGCACCGAGGCTGCTCTGCAGAAGGAGACGTGGCGGCCCT TACTGCCGTCGAAGTCTGCTGCCTCCGCCAGCGTCTCCAGAGCCTCCGAGAGGCTGGCAT TGTGGTGCGTGAGGGGTGTGGGACGCTGGCAGGCATAGGGCAGCATCCACACTGGACTTG GCAGCTCCTCCCTGGGCACAGCCACCTCCAGGCGGTGCCGGCGCTCCACGGGGACAGGCT GGCCAGCCGCCATGCTCTCCGTGAACCAGCTTACGTCTAACAGCGCCGGGTGGCTGCAAC CCGGGGGAAGGG |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 683-790, + strand, RNAz p=0.817174 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 683-790, + strand, RNAz p=0.817174 |
| Aligned organism(s): 23 entry(ies) | More info |
| Aligned organism(s): 23 entry(ies) | Help | Less info |
| 89-225, gnl|bosTau2|chr4 (39034429-39034565) | |
| 89-225, gnl|Hg17|chr7 (43887236-43887372) | |
| 89-225, gnl|Mm7|chr11 (5782070-5782206) | |
| 415-587, gnl|bosTau2|chr4 (39038601-39038773) | |
| 415-587, gnl|canFam2|chrUn (36184256-36184036) | |
| 415-587, gnl|dasNov1|scaffold_87557 (3712-3491) | |
| 415-587, gnl|echTel1|scaffold_304843 (4363-4583) | |
| 415-587, gnl|fr1|chrUn (28581018-28580817) | |
| 415-587, gnl|galGal2|chr6 (21477677-21477899) | |
| 415-587, gnl|hg17|chr7 (43892386-43892606) | |
| 415-587, gnl|Hg17|chr7 (43892409-43892581) | |
| 415-587, gnl|loxAfr1|scaffold_4479 (16304-16084) | |
| 415-587, gnl|mm7|chr11 (5787403-5787622) | |
| 415-587, gnl|Mm7|chr11 (5787418-5787590) | |
| 415-587, gnl|monDom2|scaffold_63 (6787096-6787305) | |
| 415-587, gnl|oryCun1|scaffold_118138 (583-791) | |
| 415-587, gnl|panTro1|chr6_random (31063253-31063033) | |
| 415-587, gnl|rheMac2|chr3 (82257365-82257144) | |
| 415-587, gnl|rn3|chr14 (86517965-86518177) | |
| 415-587, gnl|tetNig1|chrUn_random (723994-723792) | |
| 683-790, gnl|bosTau2|chr4 (39039523-39039630) | |
| 683-790, gnl|Hg17|chr7 (43893569-43893676) | |
| 683-790, gnl|Mm7|chr11 (5788194-5788301) |
| Aligned organism(s): 23 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 89-225, gnl|bosTau2|chr4 (39034429-39034565) | |
| 89-225, gnl|Hg17|chr7 (43887236-43887372) | |
| 89-225, gnl|Mm7|chr11 (5782070-5782206) | |
| 415-587, gnl|bosTau2|chr4 (39038601-39038773) | |
| 415-587, gnl|canFam2|chrUn (36184256-36184036) | |
| 415-587, gnl|dasNov1|scaffold_87557 (3712-3491) | |
| 415-587, gnl|echTel1|scaffold_304843 (4363-4583) | |
| 415-587, gnl|fr1|chrUn (28581018-28580817) | |
| 415-587, gnl|galGal2|chr6 (21477677-21477899) | |
| 415-587, gnl|hg17|chr7 (43892386-43892606) | |
| 415-587, gnl|Hg17|chr7 (43892409-43892581) | |
| 415-587, gnl|loxAfr1|scaffold_4479 (16304-16084) | |
| 415-587, gnl|mm7|chr11 (5787403-5787622) | |
| 415-587, gnl|Mm7|chr11 (5787418-5787590) | |
| 415-587, gnl|monDom2|scaffold_63 (6787096-6787305) | |
| 415-587, gnl|oryCun1|scaffold_118138 (583-791) | |
| 415-587, gnl|panTro1|chr6_random (31063253-31063033) | |
| 415-587, gnl|rheMac2|chr3 (82257365-82257144) | |
| 415-587, gnl|rn3|chr14 (86517965-86518177) | |
| 415-587, gnl|tetNig1|chrUn_random (723994-723792) | |
| 683-790, gnl|bosTau2|chr4 (39039523-39039630) | |
| 683-790, gnl|Hg17|chr7 (43893569-43893676) | |
| 683-790, gnl|Mm7|chr11 (5788194-5788301) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| eru (0.120048) |