Non-Coding RNA Search

Ss1.1-Pig2-119J06.5

Sequence:


               
               TGCGGTATGGAGTCGCCTCGGGGGCGGCCTGGGCCCGAGGCGGACCTTCTGGCTCTAGGA
GAACAGCAAGCCGCGATCTTCGGCGGCGGCCCGGGCCGAACGCCCTCTGAGCCGCCCGCA
GGCCTCCGGCTGTCCGGAGAGGAAGAGGCCGAGAACCGTTGAGGGCACGAGCCGCCACCC
CAGGGCGTCCCCAAGCCTTCGAGCCTGCAGCTTCGTCACCGGCCGGAACGGGAGCCTCGG
GGAGGATGAGCTGGGCCGGCGAGGACCCCGTCTGGGGCAGAGAGCTGCCCTGGGGGCGCC
GGTCCCGAGCATTGATCCGCATGGTCCTTGCGGCTCCAAGAACCCTGAGCCGCCAGAGGA
CAAGCCTGCATCTGAGAGGGTCTGCCGTCGGGGGAGCCCTGGAGGCGGCGGGATGGATGT
TGAGCAGGAGAAGGAAGACGATGAGGAGGAGGCGGCAGCCGGCAGGACTGGCCGTTCGTT
CTCCAGCCGCCTTCAGGACAGCCGCAGCCTGGACGGGCTGAGCGGGGCGTGCGGAGGCTC
CGGGTCCGCAGGGGGTGCCGAGTATGGCCCGGGCGGCGGGCGGCGCGCCACCATCTCCAG
CCCCCTGGAGCTCGAGGGCACGGTGAGCCGCCATGGCGACCTCACCCACTTTGTCGCCAA
CAATCTGCAACTGAAGATCCGTCTGAGCGGCGCCCCTCAACCCCCGCCCCCTGCCCCTGC
GCGGCCCTGTTCAGCTCCGACACCCACTCCGGCCATCCCTCCCATCGATCCCGACGTGCT
GCGGGACCTGGAGCGGCTGAGTCG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGCGGTATGGAGTCGCCTCGGGGGCGGCCTGGGCCCGAGGCGGACCTTCTGGCTCTAGGA
GAACAGCAAGCCGCGATCTTCGGCGGCGGCCCGGGCCGAACGCCCTCTGAGCCGCCCGCA
GGCCTCCGGCTGTCCGGAGAGGAAGAGGCCGAGAACCGTTGAGGGCACGAGCCGCCACCC
CAGGGCGTCCCCAAGCCTTCGAGCCTGCAGCTTCGTCACCGGCCGGAACGGGAGCCTCGG
GGAGGATGAGCTGGGCCGGCGAGGACCCCGTCTGGGGCAGAGAGCTGCCCTGGGGGCGCC
GGTCCCGAGCATTGATCCGCATGGTCCTTGCGGCTCCAAGAACCCTGAGCCGCCAGAGGA
CAAGCCTGCATCTGAGAGGGTCTGCCGTCGGGGGAGCCCTGGAGGCGGCGGGATGGATGT
TGAGCAGGAGAAGGAAGACGATGAGGAGGAGGCGGCAGCCGGCAGGACTGGCCGTTCGTT
CTCCAGCCGCCTTCAGGACAGCCGCAGCCTGGACGGGCTGAGCGGGGCGTGCGGAGGCTC
CGGGTCCGCAGGGGGTGCCGAGTATGGCCCGGGCGGCGGGCGGCGCGCCACCATCTCCAG
CCCCCTGGAGCTCGAGGGCACGGTGAGCCGCCATGGCGACCTCACCCACTTTGTCGCCAA
CAATCTGCAACTGAAGATCCGTCTGAGCGGCGCCCCTCAACCCCCGCCCCCTGCCCCTGC
GCGGCCCTGTTCAGCTCCGACACCCACTCCGGCCATCCCTCCCATCGATCCCGACGTGCT
GCGGGACCTGGAGCGGCTGAGTCG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q9P1D2_HUMAN

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q9P1D2_HUMAN

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               397-498, + strand, RNAz p=0.556027
               

               
               579-698, - strand, RNAz p=0.884981

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               397-498, + strand, RNAz p=0.556027
               

               
               579-698, - strand, RNAz p=0.884981

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of NM_017622, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of NM_017622, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-804, gnl|bosTau2|chr2 (77524218-77523419)
               

               
               1-804, gnl|Hg17|chr17 (8034189-8033378)
               

               
               1-804, gnl|Mm7|chr11 (69141366-69142186)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-804, gnl|bosTau2|chr2 (77524218-77523419)
               

               
               1-804, gnl|Hg17|chr17 (8034189-8033378)
               

               
               1-804, gnl|Mm7|chr11 (69141366-69142186)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               fty (0.17584)
               

               
               ebs (0.118301)
               

               
               jej (0.0989218)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fty (0.17584)
               

               
               ebs (0.118301)
               

               
               jej (0.0989218)

	397-498, + strand, RNAz p=0.556027
	579-698, - strand, RNAz p=0.884981

	1-804, gnl\|bosTau2\|chr2 (77524218-77523419)
	1-804, gnl\|Hg17\|chr17 (8034189-8033378)
	1-804, gnl\|Mm7\|chr11 (69141366-69142186)