Non-Coding RNA Search

Ss1.1-Pig2-119K03.5

Sequence:


               
               ACAGCGCTGACCTCCATTGGGGTGGTAAGGCATGCACGCTAGGGTTGGGGGTGGGGGGGC
TGCCAGGCCCTTACACAGCGGTCTTGTCTGTCTCAGGGCTCCTTCCTGTGTGACTGGATC
CTGCTAACATTCATGAACAAAAACAAGGTCTACAGCCATAAGAAATTTGACAAGGTGTGT
ACACCGAGGCACTCCTCAGGTAGCTGGCCTGTGATCCTGGCCCTTGTTTTGGGCCAGGCG
CCTCCCCCACCTGGTCCCTGCTCCACACTCCCAGGGCTGGCAGGCCAGCTGTGGGGTGAA
GGGGCAGAGCCANGTCCTGGCTGTCCCACCTCCACNGCCTTGCCCCACCTCTGCCCCATC
TGAGCAGATGGTGGATGCTCCTGGCGGGGGTGCAGGACCAGGGCTCTGCGCCTCTGAGCC
TTCCCAACAGGACTGCACACTCACAGACGCCCGAGGTCTGGCCCAGCTCTGAGCCCCCTC
CTGCCTTCTATCACGTGGCACCGGAGACCTGGGCCTATCGGAGCCCCTGAAGTTTTTGGT
CCCAAGACAGTCCCCAGGAGCACGGCTGGGACCTTAGACCTGGGCCCTGCCCATACACCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ACAGCGCTGACCTCCATTGGGGTGGTAAGGCATGCACGCTAGGGTTGGGGGTGGGGGGGC
TGCCAGGCCCTTACACAGCGGTCTTGTCTGTCTCAGGGCTCCTTCCTGTGTGACTGGATC
CTGCTAACATTCATGAACAAAAACAAGGTCTACAGCCATAAGAAATTTGACAAGGTGTGT
ACACCGAGGCACTCCTCAGGTAGCTGGCCTGTGATCCTGGCCCTTGTTTTGGGCCAGGCG
CCTCCCCCACCTGGTCCCTGCTCCACACTCCCAGGGCTGGCAGGCCAGCTGTGGGGTGAA
GGGGCAGAGCCANGTCCTGGCTGTCCCACCTCCACNGCCTTGCCCCACCTCTGCCCCATC
TGAGCAGATGGTGGATGCTCCTGGCGGGGGTGCAGGACCAGGGCTCTGCGCCTCTGAGCC
TTCCCAACAGGACTGCACACTCACAGACGCCCGAGGTCTGGCCCAGCTCTGAGCCCCCTC
CTGCCTTCTATCACGTGGCACCGGAGACCTGGGCCTATCGGAGCCCCTGAAGTTTTTGGT
CCCAAGACAGTCCCCAGGAGCACGGCTGGGACCTTAGACCTGGGCCCTGCCCATACACCT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q9Z2S4_RAT

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q9Z2S4_RAT

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               171-520, - strand, RNAz p=0.999982

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               171-520, - strand, RNAz p=0.999982

Predicted microRNA(s): 2 entry(ies)

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Predicted microRNA(s): 2 entry(ies)

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               203-361, - strand, RNAmicro p=0.998698
               

               
               294-382, + strand, RNAmicro p=0.997904

Predicted microRNA(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               203-361, - strand, RNAmicro p=0.998698
               

               
               294-382, + strand, RNAmicro p=0.997904

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               53-600, gnl|bosTau2|chr17 (23046549-23047107)
               

               
               53-600, gnl|Hg17|chr12 (131808513-131809012)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               53-600, gnl|bosTau2|chr17 (23046549-23047107)
               

               
               53-600, gnl|Hg17|chr12 (131808513-131809012)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               amn (0.417711)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               amn (0.417711)

	203-361, - strand, RNAmicro p=0.998698
	294-382, + strand, RNAmicro p=0.997904

	53-600, gnl\|bosTau2\|chr17 (23046549-23047107)
	53-600, gnl\|Hg17\|chr12 (131808513-131809012)