Non-Coding RNA Search

Ss1.1-Pig2-119M08.5

Sequence:


               
               TGGCGGAGAAGGATGACACCGGATTTTGACGAAGAGGTGGTTTTTGAGAATTCTCCACTT
TACCAGTACTTACAGGATCTGGGACACACGGACTTTGAAATATGTTCTTCTCTGTCACCA
AAACCAGAACAATGCACAGAGACAGAGGGACAACCAAAGCCTCCTGCAAGAGCGCTGCCA
AAACAAGGCATCCTGTTAAAAGTGGCTGAAATCATCAAAAGTTGGATTTTAGCTCAGTGC
AATAAGAATGATGACTTACTTCACAAGTTGGATATTGGATTCCGACTCGACTCACTAAAT
ACCATCCTGCAACAGGAAGTCCTGTTACAAGAGGATGTGGAGCTGATTGAGCTACTTGAT
CCCAGTATCCTGTCTGCAGGGCAATCTCAACAACAGGAAAATGGATACCTTCCAACACTT
GGCTCCCTGGCAACCCCTAATATTTGGGATGTCTCAATGCTATTTGCCTTCATTAGTTTG
CTCATTATGCTTCCCACTTGGTGGATTGTATCTTCCTGGCTGGTATGGGGAATGATTCTA
TCTGTTTATCTGATCATAAGAGCTTTGAGATTATGGAGGACAGCCAGACTACAGATAACC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGGCGGAGAAGGATGACACCGGATTTTGACGAAGAGGTGGTTTTTGAGAATTCTCCACTT
TACCAGTACTTACAGGATCTGGGACACACGGACTTTGAAATATGTTCTTCTCTGTCACCA
AAACCAGAACAATGCACAGAGACAGAGGGACAACCAAAGCCTCCTGCAAGAGCGCTGCCA
AAACAAGGCATCCTGTTAAAAGTGGCTGAAATCATCAAAAGTTGGATTTTAGCTCAGTGC
AATAAGAATGATGACTTACTTCACAAGTTGGATATTGGATTCCGACTCGACTCACTAAAT
ACCATCCTGCAACAGGAAGTCCTGTTACAAGAGGATGTGGAGCTGATTGAGCTACTTGAT
CCCAGTATCCTGTCTGCAGGGCAATCTCAACAACAGGAAAATGGATACCTTCCAACACTT
GGCTCCCTGGCAACCCCTAATATTTGGGATGTCTCAATGCTATTTGCCTTCATTAGTTTG
CTCATTATGCTTCCCACTTGGTGGATTGTATCTTCCTGGCTGGTATGGGGAATGATTCTA
TCTGTTTATCTGATCATAAGAGCTTTGAGATTATGGAGGACAGCCAGACTACAGATAACC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|26334395|dbj|BAC30915.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|26334395|dbj|BAC30915.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               270-428, - strand, RNAz p=0.981435

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               270-428, - strand, RNAz p=0.981435

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               43-183, gnl|bosTau2|chr5 (17336088-17335948)
               

               
               43-183, gnl|Hg17|chr12 (94148178-94148315)
               

               
               43-183, gnl|Mm7|chr10 (93566005-93565865)
               


               
               270-454, gnl|bosTau2|chr5 (17326858-17326673)
               

               
               270-454, gnl|Hg17|chr12 (94159149-94159334)
               

               
               270-454, gnl|Mm7|chr10 (93559429-93559247)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               43-183, gnl|bosTau2|chr5 (17336088-17335948)
               

               
               43-183, gnl|Hg17|chr12 (94148178-94148315)
               

               
               43-183, gnl|Mm7|chr10 (93566005-93565865)
               


               
               270-454, gnl|bosTau2|chr5 (17326858-17326673)
               

               
               270-454, gnl|Hg17|chr12 (94159149-94159334)
               

               
               270-454, gnl|Mm7|chr10 (93559429-93559247)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               nco (0.161734)
               

               
               lin (0.145603)
               

               
               ssp (0.13552)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nco (0.161734)
               

               
               lin (0.145603)
               

               
               ssp (0.13552)

	43-183, gnl\|bosTau2\|chr5 (17336088-17335948)
	43-183, gnl\|Hg17\|chr12 (94148178-94148315)
	43-183, gnl\|Mm7\|chr10 (93566005-93565865)

	270-454, gnl\|bosTau2\|chr5 (17326858-17326673)
	270-454, gnl\|Hg17\|chr12 (94159149-94159334)
	270-454, gnl\|Mm7\|chr10 (93559429-93559247)