Non-Coding RNA Search

Ss1.1-Pig2-120A21.5

Sequence:


               
               CAGTTTGCGGGGGCTTCTCAGTGGCCTTTCCGGCAGGGCTATGGAGGCCTGGACTGGGCC
TCAGAGGCCTTCAGTCAGCTCTACAATCCCGGCTTCGACTGCCACGTCAGCGAGCCCAAC
GTGATCTTGGACATCTCCAACTACACACCCCAGAAGGTGAAGCAGCAGACGGCGGTGTCG
GAGACCTTCTCCGAGTCGTCCTCCGACAGCACCCAGTTCAATCAGCCGGTCGGCGGCGGT
TTCCGGCGTGCCAACAGCGAGGCCTCGAGCAGCGAGGGCCAGTCGAGCCTGTCCAGCCTG
GAGAAGCTGATGATGGACTGGAACGAGGCCTCGTCCGCCCCCGGTTACAACTGGAACCAG
AGCGTCCTCTTCCAGAGCAGCTCTAAGCCGGGCCGTGGACGGCGGAAGAAGGTGGACCTC
TTTGAGGCCTCCCATCTGGGCTTTCCGTCATCGGCCTCGGCCACTGCCTCGGGCTACCCG
TCCAAACGGAGCACCGGGCCCCGGCAGCCTCGGGGCGGACGGGGTGGTGGGGCCTGCTCT
GCCAAGAAGGAGCGGGGCGGTGCGGCGGCCAAGGCCAAGTTCATCCCCAAGCCACAGCCG
GTCAACCCGCTGTTCCAGGACAGCCCAGACCTCGGCCTGGACTACTACAGCGGCGACAGC
AGCATGTCACCACTGCCCTCGCAGTCGAGGGCCTTCAGTGTGGGCGAACGAGACCCCTGT
GACTTCATGGGACCCTACTCCATGAACCCATCCACACCATCTGACGGCACCTTCGGCCAA
GGCTTCCACTGCGACTCGCCCAGCCTGGGTGCCCCTGAGCTGGATGGCAAGCATTTCCCG
CCACTGGCCCACCCGCCCACGGTGTTCGATGCTGGCCTGCAGAAGGCGTATTCGCCCACC
TGCTCACCCACCCTGGGCTTCAAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CAGTTTGCGGGGGCTTCTCAGTGGCCTTTCCGGCAGGGCTATGGAGGCCTGGACTGGGCC
TCAGAGGCCTTCAGTCAGCTCTACAATCCCGGCTTCGACTGCCACGTCAGCGAGCCCAAC
GTGATCTTGGACATCTCCAACTACACACCCCAGAAGGTGAAGCAGCAGACGGCGGTGTCG
GAGACCTTCTCCGAGTCGTCCTCCGACAGCACCCAGTTCAATCAGCCGGTCGGCGGCGGT
TTCCGGCGTGCCAACAGCGAGGCCTCGAGCAGCGAGGGCCAGTCGAGCCTGTCCAGCCTG
GAGAAGCTGATGATGGACTGGAACGAGGCCTCGTCCGCCCCCGGTTACAACTGGAACCAG
AGCGTCCTCTTCCAGAGCAGCTCTAAGCCGGGCCGTGGACGGCGGAAGAAGGTGGACCTC
TTTGAGGCCTCCCATCTGGGCTTTCCGTCATCGGCCTCGGCCACTGCCTCGGGCTACCCG
TCCAAACGGAGCACCGGGCCCCGGCAGCCTCGGGGCGGACGGGGTGGTGGGGCCTGCTCT
GCCAAGAAGGAGCGGGGCGGTGCGGCGGCCAAGGCCAAGTTCATCCCCAAGCCACAGCCG
GTCAACCCGCTGTTCCAGGACAGCCCAGACCTCGGCCTGGACTACTACAGCGGCGACAGC
AGCATGTCACCACTGCCCTCGCAGTCGAGGGCCTTCAGTGTGGGCGAACGAGACCCCTGT
GACTTCATGGGACCCTACTCCATGAACCCATCCACACCATCTGACGGCACCTTCGGCCAA
GGCTTCCACTGCGACTCGCCCAGCCTGGGTGCCCCTGAGCTGGATGGCAAGCATTTCCCG
CCACTGGCCCACCCGCCCACGGTGTTCGATGCTGGCCTGCAGAAGGCGTATTCGCCCACC
TGCTCACCCACCCTGGGCTTCAAG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|38014309|gb|AAH02677.2|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|38014309|gb|AAH02677.2|

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               357-476, - strand, RNAz p=0.57646
               

               
               557-924, - strand, RNAz p=0.988512

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               357-476, - strand, RNAz p=0.57646
               

               
               557-924, - strand, RNAz p=0.988512

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-924, gnl|bosTau2|chr2 (79000810-79001733)
               

               
               1-924, gnl|Hg17|chr1 (27559468-27558542)
               

               
               1-924, gnl|Mm7|chr4 (132443162-132444088)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-924, gnl|bosTau2|chr2 (79000810-79001733)
               

               
               1-924, gnl|Hg17|chr1 (27559468-27558542)
               

               
               1-924, gnl|Mm7|chr4 (132443162-132444088)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               pla (0.133672)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pla (0.133672)

	357-476, - strand, RNAz p=0.57646
	557-924, - strand, RNAz p=0.988512

	1-924, gnl\|bosTau2\|chr2 (79000810-79001733)
	1-924, gnl\|Hg17\|chr1 (27559468-27558542)
	1-924, gnl\|Mm7\|chr4 (132443162-132444088)