Non-Coding RNA Search

Ss1.1-Pig2-120C09.5

Sequence:


               
               TTGGGGAGAACTTGTAAGTCTGTGAGTGACGCCCTTCAAAGAGAAGGATTTGGTAGTGGG
AAAATGCCTACATGACCTATTCCCCCCTTGGGTTATAGGGATGTGGTAGCTGAACCTCCC
CTGCATCAATCATTTAGCAGCCTCTCTCTGGGAAGAGATCTGTCAACTTGAAAGCAGTTA
CCTCTTTTCCCAAAGCACCAGGCTAGATGCTAAAGCCCTCCAGGAGTCTTCCTACGTGCA
ATGCAGAAGGCCCTCGATGGGAATGGCCCTGTTTCCCATGTGTGTACAAGGCGGTTTGAT
TGAAGAGTGAAGTGCATGCCATCAGAGCAGGGAGACACTTTGCAGAGATGCTGTTAATCT
GTGTCACCAGACCTATGGGAAAACTATTTCTGTTCGTAATGCATCATGGAAATCACACTA
TTCTGCTAAAATCAGTTATTAGCATAGCAGCCTGAGCACTTACGTCTCTCTTTTCATCCT
GCAGGAGGATGTAGTTTCTAAGTTTCGATTAATGTTCATAAGATTATGGTGTCTAATAAA
TTACAGGATTGGAACTGCGATCCTTGGTACCACAGTCACAGAACTGGGGGTCATTTTCTA
AAAGAAACTAACGGAACAAGTTCTCTTCCAACAAAGAAACTGTACTGTAGAAATTAATTT
CTTCCATGAATTTTATATATTGTGTACAAATATAAGGTATGTATCTAAATACAAAGAAAA
CTCTATCATCGTGTAGATACTAGTATTCTCTGTTACTGCACAGAAGTGATTTTCTCATGA
TGAAAATAAAGTTCACACACATAC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTGGGGAGAACTTGTAAGTCTGTGAGTGACGCCCTTCAAAGAGAAGGATTTGGTAGTGGG
AAAATGCCTACATGACCTATTCCCCCCTTGGGTTATAGGGATGTGGTAGCTGAACCTCCC
CTGCATCAATCATTTAGCAGCCTCTCTCTGGGAAGAGATCTGTCAACTTGAAAGCAGTTA
CCTCTTTTCCCAAAGCACCAGGCTAGATGCTAAAGCCCTCCAGGAGTCTTCCTACGTGCA
ATGCAGAAGGCCCTCGATGGGAATGGCCCTGTTTCCCATGTGTGTACAAGGCGGTTTGAT
TGAAGAGTGAAGTGCATGCCATCAGAGCAGGGAGACACTTTGCAGAGATGCTGTTAATCT
GTGTCACCAGACCTATGGGAAAACTATTTCTGTTCGTAATGCATCATGGAAATCACACTA
TTCTGCTAAAATCAGTTATTAGCATAGCAGCCTGAGCACTTACGTCTCTCTTTTCATCCT
GCAGGAGGATGTAGTTTCTAAGTTTCGATTAATGTTCATAAGATTATGGTGTCTAATAAA
TTACAGGATTGGAACTGCGATCCTTGGTACCACAGTCACAGAACTGGGGGTCATTTTCTA
AAAGAAACTAACGGAACAAGTTCTCTTCCAACAAAGAAACTGTACTGTAGAAATTAATTT
CTTCCATGAATTTTATATATTGTGTACAAATATAAGGTATGTATCTAAATACAAAGAAAA
CTCTATCATCGTGTAGATACTAGTATTCTCTGTTACTGCACAGAAGTGATTTTCTCATGA
TGAAAATAAAGTTCACACACATAC

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               1-199, - strand, RNAz p=0.693106
               

               
               694-804, - strand, RNAz p=0.975253

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-199, - strand, RNAz p=0.693106
               

               
               694-804, - strand, RNAz p=0.975253

Aligned organism(s): 14 entry(ies)

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Aligned organism(s): 14 entry(ies)

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               1-804, gnl|bosTau2|chr10 (29408095-29407306)
               

               
               1-804, gnl|canFam2|chr8 (30361506-30362159)
               

               
               1-804, gnl|dasNov1|scaffold_15178 (23639-22984)
               

               
               1-804, gnl|echTel1|scaffold_322884 (155246-154598)
               

               
               1-804, gnl|hg17|chr14 (50532432-50533091)
               

               
               1-804, gnl|Hg17|chr14 (50533348-50532543)
               

               
               1-804, gnl|loxAfr1|scaffold_3145 (40327-40986)
               

               
               1-804, gnl|mm7|chr12 (68207050-68207689)
               

               
               1-804, gnl|Mm7|chr12 (68207941-68207149)
               

               
               1-804, gnl|monDom2|scaffold_73 (7449558-7450138)
               

               
               1-804, gnl|oryCun1|scaffold_205664 (938-1570)
               

               
               1-804, gnl|panTro1|chr15 (49951382-49952040)
               

               
               1-804, gnl|rheMac2|chr7 (114044275-114044940)
               

               
               1-804, gnl|rn3|chr6 (92383115-92383767)

Aligned organism(s): 14 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-804, gnl|bosTau2|chr10 (29408095-29407306)
               

               
               1-804, gnl|canFam2|chr8 (30361506-30362159)
               

               
               1-804, gnl|dasNov1|scaffold_15178 (23639-22984)
               

               
               1-804, gnl|echTel1|scaffold_322884 (155246-154598)
               

               
               1-804, gnl|hg17|chr14 (50532432-50533091)
               

               
               1-804, gnl|Hg17|chr14 (50533348-50532543)
               

               
               1-804, gnl|loxAfr1|scaffold_3145 (40327-40986)
               

               
               1-804, gnl|mm7|chr12 (68207050-68207689)
               

               
               1-804, gnl|Mm7|chr12 (68207941-68207149)
               

               
               1-804, gnl|monDom2|scaffold_73 (7449558-7450138)
               

               
               1-804, gnl|oryCun1|scaffold_205664 (938-1570)
               

               
               1-804, gnl|panTro1|chr15 (49951382-49952040)
               

               
               1-804, gnl|rheMac2|chr7 (114044275-114044940)
               

               
               1-804, gnl|rn3|chr6 (92383115-92383767)

Expressed library(ies): 4 entry(ies)

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Expressed library(ies): 4 entry(ies)

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               cbe (0.478469)
               

               
               fcc (0.197785)
               

               
               fco (0.157208)
               

               
               cbr (0.127975)

Expressed library(ies): 4 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cbe (0.478469)
               

               
               fcc (0.197785)
               

               
               fco (0.157208)
               

               
               cbr (0.127975)

	1-199, - strand, RNAz p=0.693106
	694-804, - strand, RNAz p=0.975253

	1-804, gnl\|bosTau2\|chr10 (29408095-29407306)
	1-804, gnl\|canFam2\|chr8 (30361506-30362159)
	1-804, gnl\|dasNov1\|scaffold_15178 (23639-22984)
	1-804, gnl\|echTel1\|scaffold_322884 (155246-154598)
	1-804, gnl\|hg17\|chr14 (50532432-50533091)
	1-804, gnl\|Hg17\|chr14 (50533348-50532543)
	1-804, gnl\|loxAfr1\|scaffold_3145 (40327-40986)
	1-804, gnl\|mm7\|chr12 (68207050-68207689)
	1-804, gnl\|Mm7\|chr12 (68207941-68207149)
	1-804, gnl\|monDom2\|scaffold_73 (7449558-7450138)
	1-804, gnl\|oryCun1\|scaffold_205664 (938-1570)
	1-804, gnl\|panTro1\|chr15 (49951382-49952040)
	1-804, gnl\|rheMac2\|chr7 (114044275-114044940)
	1-804, gnl\|rn3\|chr6 (92383115-92383767)