Ss1.1-Pig2-120D14.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GGATTCTGAGCGGAGGAGGAGAAGCTCAGTGCGGACCCCGTGGGCGGGGCTGTCCTGTCC GGCCTCCGTCCAGCTGCCGCGCTCCCCTGGCTCGGGTATTAGGTGGCTTGGAGCCCGCAC CGTCTCCAGGCGCGGGGACTTGGTTCAGATGTATGCCAGCCTTCCTTGAGGGAATTTCTG CAGAAGGAAATATCAGATCAAGACACAAGATGGTGAATCCTAAAGCTGACGTTAAACTTA AGACTTCCAGGGTGACTGCTGCTTCAGTCTCCATGGAGTCTTTAAAAGGTGCAGGAGATT CAGTAGATGAACAGAATTTCTGCAGGGGAGGAATAAAGAGTGCATCACTGAAGGATTTAT GTCTTGAGGACAAAAGGCGCATTGCAAACTTAATTAAAGAACTGGCCAGAGTAAGTGAGG AAAAGGAAGTGACAGAAGAAAGACTGAAAGCTGAGCAGGAATCATTTGAGAGGAAGATCC GCCAGTGGGAAGAACAGAATGATCTGATCATCAAAGAAAGGGAAGCTCTTCAGCTACAGT ATAAAGAATGTCAAGAACTTCTAAGTCTCTATCAGAAATACCTATCAGAACAGCAAGAGA AGCTCACCATGT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GGATTCTGAGCGGAGGAGGAGAAGCTCAGTGCGGACCCCGTGGGCGGGGCTGTCCTGTCC GGCCTCCGTCCAGCTGCCGCGCTCCCCTGGCTCGGGTATTAGGTGGCTTGGAGCCCGCAC CGTCTCCAGGCGCGGGGACTTGGTTCAGATGTATGCCAGCCTTCCTTGAGGGAATTTCTG CAGAAGGAAATATCAGATCAAGACACAAGATGGTGAATCCTAAAGCTGACGTTAAACTTA AGACTTCCAGGGTGACTGCTGCTTCAGTCTCCATGGAGTCTTTAAAAGGTGCAGGAGATT CAGTAGATGAACAGAATTTCTGCAGGGGAGGAATAAAGAGTGCATCACTGAAGGATTTAT GTCTTGAGGACAAAAGGCGCATTGCAAACTTAATTAAAGAACTGGCCAGAGTAAGTGAGG AAAAGGAAGTGACAGAAGAAAGACTGAAAGCTGAGCAGGAATCATTTGAGAGGAAGATCC GCCAGTGGGAAGAACAGAATGATCTGATCATCAAAGAAAGGGAAGCTCTTCAGCTACAGT ATAAAGAATGTCAAGAACTTCTAAGTCTCTATCAGAAATACCTATCAGAACAGCAAGAGA AGCTCACCATGT |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 38 entry(ies) | More info |
| Aligned organism(s): 38 entry(ies) | Help | Less info |
| 171-314, gnl|bosTau2|chr24 (14719049-14719192) | |
| 171-314, gnl|canFam2|chr7 (56370523-56370664) | |
| 171-314, gnl|canFam2|chr7 (56370710-56370505) | |
| 171-314, gnl|dasNov1|scaffold_55387 (5952-6096) | |
| 171-314, gnl|dasNov1|scaffold_55387 (6145-5937) | |
| 171-314, gnl|echTel1|scaffold_308806 (141424-141568) | |
| 171-314, gnl|echTel1|scaffold_308806 (141613-141412) | |
| 171-314, gnl|galGal2|chrUn (7563182-7562978) | |
| 171-314, gnl|hg17|chr18 (32669148-32669356) | |
| 171-314, gnl|Hg17|chr18 (32669194-32669337) | |
| 171-314, gnl|hg17|chr3 (154329901-154330046) | |
| 171-314, gnl|loxAfr1|scaffold_7518 (4204-4348) | |
| 171-314, gnl|loxAfr1|scaffold_7518 (4394-4186) | |
| 171-314, gnl|mm7|chr18 (25560143-25559999) | |
| 171-314, gnl|mm7|chr18 (25559957-25560161) | |
| 171-314, gnl|Mm7|chr18 (25559999-25560142) | |
| 171-314, gnl|monDom2|scaffold_4 (10190218-10190007) | |
| 171-314, gnl|oryCun1|scaffold_172630 (82759-82614) | |
| 171-314, gnl|oryCun1|scaffold_178847 (3242-3454) | |
| 171-314, gnl|panTro1|chr17 (28646828-28647036) | |
| 171-314, gnl|panTro1|chr2_random (18193560-18193705) | |
| 171-314, gnl|rheMac2|chr18 (29762958-29763165) | |
| 171-314, gnl|rheMac2|chr2 (134516594-134516449) | |
| 171-314, gnl|rn3|chr18 (17150041-17150186) | |
| 171-314, gnl|rn3|chr18 (17150231-17150023) | |
| 171-314, gnl|xenTro1|scaffold_1807 (32468-32330) | |
| 407-525, gnl|bosTau2|chr24 (14736883-14736765) | |
| 407-525, gnl|canFam2|chr7 (56320422-56320537) | |
| 407-525, gnl|echTel1|scaffold_308806 (125853-125958) | |
| 407-525, gnl|Hg17|chr18 (32719515-32719633) | |
| 407-525, gnl|hg17|chr3 (154329690-154329807) | |
| 407-525, gnl|mm7|chr18 (25588634-25588517) | |
| 407-525, gnl|Mm7|chr18 (25588515-25588633) | |
| 407-525, gnl|oryCun1|scaffold_172630 (82962-82849) | |
| 407-525, gnl|panTro1|chr2_random (18193349-18193466) | |
| 407-525, gnl|rheMac2|chr2 (134516799-134516688) | |
| 407-525, gnl|rn3|chr18 (17126570-17126687) | |
| 407-525, gnl|xenTro1|scaffold_1807 (32686-32566) |
| Aligned organism(s): 38 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 171-314, gnl|bosTau2|chr24 (14719049-14719192) | |
| 171-314, gnl|canFam2|chr7 (56370523-56370664) | |
| 171-314, gnl|canFam2|chr7 (56370710-56370505) | |
| 171-314, gnl|dasNov1|scaffold_55387 (5952-6096) | |
| 171-314, gnl|dasNov1|scaffold_55387 (6145-5937) | |
| 171-314, gnl|echTel1|scaffold_308806 (141424-141568) | |
| 171-314, gnl|echTel1|scaffold_308806 (141613-141412) | |
| 171-314, gnl|galGal2|chrUn (7563182-7562978) | |
| 171-314, gnl|hg17|chr18 (32669148-32669356) | |
| 171-314, gnl|Hg17|chr18 (32669194-32669337) | |
| 171-314, gnl|hg17|chr3 (154329901-154330046) | |
| 171-314, gnl|loxAfr1|scaffold_7518 (4204-4348) | |
| 171-314, gnl|loxAfr1|scaffold_7518 (4394-4186) | |
| 171-314, gnl|mm7|chr18 (25560143-25559999) | |
| 171-314, gnl|mm7|chr18 (25559957-25560161) | |
| 171-314, gnl|Mm7|chr18 (25559999-25560142) | |
| 171-314, gnl|monDom2|scaffold_4 (10190218-10190007) | |
| 171-314, gnl|oryCun1|scaffold_172630 (82759-82614) | |
| 171-314, gnl|oryCun1|scaffold_178847 (3242-3454) | |
| 171-314, gnl|panTro1|chr17 (28646828-28647036) | |
| 171-314, gnl|panTro1|chr2_random (18193560-18193705) | |
| 171-314, gnl|rheMac2|chr18 (29762958-29763165) | |
| 171-314, gnl|rheMac2|chr2 (134516594-134516449) | |
| 171-314, gnl|rn3|chr18 (17150041-17150186) | |
| 171-314, gnl|rn3|chr18 (17150231-17150023) | |
| 171-314, gnl|xenTro1|scaffold_1807 (32468-32330) | |
| 407-525, gnl|bosTau2|chr24 (14736883-14736765) | |
| 407-525, gnl|canFam2|chr7 (56320422-56320537) | |
| 407-525, gnl|echTel1|scaffold_308806 (125853-125958) | |
| 407-525, gnl|Hg17|chr18 (32719515-32719633) | |
| 407-525, gnl|hg17|chr3 (154329690-154329807) | |
| 407-525, gnl|mm7|chr18 (25588634-25588517) | |
| 407-525, gnl|Mm7|chr18 (25588515-25588633) | |
| 407-525, gnl|oryCun1|scaffold_172630 (82962-82849) | |
| 407-525, gnl|panTro1|chr2_random (18193349-18193466) | |
| 407-525, gnl|rheMac2|chr2 (134516799-134516688) | |
| 407-525, gnl|rn3|chr18 (17126570-17126687) | |
| 407-525, gnl|xenTro1|scaffold_1807 (32686-32566) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cli (0.152812) |