Non-Coding RNA Search

Ss1.1-Pig2-120D22.5

Sequence:


               
               CAAGTCTCTTTTCTCCTAAGTCTTGGGTTTTCCTAAATTTCTTTGGTTTTGCTTTGTTGG
CAGGGGGCCAGGGAATCCTGGCCTGGACACAGCTTTATACTTTATGGTTACTTAGCTGGC
CATCCAAGTACAAGGCAGGGGGCAGCTGGCACTCTCTACCCATGGAGAACATTGACCTCC
CTTCGCCCATCCTGAGCTCTCCAGGTGGGAGGTGGGCAATGGAAGTTGTCTTTTCCCAAG
CATATTCTTTTCAGTCTCTCCCGGAAGGAAGCCAGGTGCCTGAAGGAGGCTGAGTTCCCA
AGGATGAGCCTCCATGCCCACTGCTTAAGTGCCCATGGGGTTGTGGATCTGTACCCTGCC
CCTCACAAGGAGGTACTAAGGAGTTAGTGCAGAGAGGCCCCATCATGCCCTGTAGCCTCA
CCACTTCCCATCTTGACCTGGAACCACAGCTTCATCCCAGAAGCCCACAGTCTCAGCTCC
TCCCCACTAGCACCACCTCAGCTCCCAAGAATTCTCAACAGGGAAGAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CAAGTCTCTTTTCTCCTAAGTCTTGGGTTTTCCTAAATTTCTTTGGTTTTGCTTTGTTGG
CAGGGGGCCAGGGAATCCTGGCCTGGACACAGCTTTATACTTTATGGTTACTTAGCTGGC
CATCCAAGTACAAGGCAGGGGGCAGCTGGCACTCTCTACCCATGGAGAACATTGACCTCC
CTTCGCCCATCCTGAGCTCTCCAGGTGGGAGGTGGGCAATGGAAGTTGTCTTTTCCCAAG
CATATTCTTTTCAGTCTCTCCCGGAAGGAAGCCAGGTGCCTGAAGGAGGCTGAGTTCCCA
AGGATGAGCCTCCATGCCCACTGCTTAAGTGCCCATGGGGTTGTGGATCTGTACCCTGCC
CCTCACAAGGAGGTACTAAGGAGTTAGTGCAGAGAGGCCCCATCATGCCCTGTAGCCTCA
CCACTTCCCATCTTGACCTGGAACCACAGCTTCATCCCAGAAGCCCACAGTCTCAGCTCC
TCCCCACTAGCACCACCTCAGCTCCCAAGAATTCTCAACAGGGAAGAG

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

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               1-192, - strand, RNAz p=0.995718
               

               
               299-407, - strand, RNAz p=0.758672

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-192, - strand, RNAz p=0.995718
               

               
               299-407, - strand, RNAz p=0.758672

Aligned organism(s): 12 entry(ies)

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Aligned organism(s): 12 entry(ies)

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               1-457, gnl|bosTau2|chr22 (37852628-37853084)
               

               
               1-457, gnl|canFam2|chr20 (42821132-42820290)
               

               
               1-457, gnl|dasNov1|scaffold_15492 (15975-16822)
               

               
               1-457, gnl|echTel1|scaffold_295621 (9493-8608)
               

               
               1-457, gnl|hg17|chr3 (49427966-49428799)
               

               
               1-457, gnl|Hg17|chr3 (49428013-49428499)
               

               
               1-457, gnl|loxAfr1|scaffold_2802 (56151-57086)
               

               
               1-457, gnl|mm7|chr9 (108037297-108036549)
               

               
               1-457, gnl|oryCun1|scaffold_187923 (60694-59892)
               

               
               1-457, gnl|panTro1|chr2 (50954701-50955538)
               

               
               1-457, gnl|rheMac2|chr2 (87019434-87018598)
               

               
               1-457, gnl|rn3|chr16_random (1007463-1006735)

Aligned organism(s): 12 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-457, gnl|bosTau2|chr22 (37852628-37853084)
               

               
               1-457, gnl|canFam2|chr20 (42821132-42820290)
               

               
               1-457, gnl|dasNov1|scaffold_15492 (15975-16822)
               

               
               1-457, gnl|echTel1|scaffold_295621 (9493-8608)
               

               
               1-457, gnl|hg17|chr3 (49427966-49428799)
               

               
               1-457, gnl|Hg17|chr3 (49428013-49428499)
               

               
               1-457, gnl|loxAfr1|scaffold_2802 (56151-57086)
               

               
               1-457, gnl|mm7|chr9 (108037297-108036549)
               

               
               1-457, gnl|oryCun1|scaffold_187923 (60694-59892)
               

               
               1-457, gnl|panTro1|chr2 (50954701-50955538)
               

               
               1-457, gnl|rheMac2|chr2 (87019434-87018598)
               

               
               1-457, gnl|rn3|chr16_random (1007463-1006735)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               fhi (0.169578)
               

               
               csp (0.161186)
               

               
               nmm (0.132802)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fhi (0.169578)
               

               
               csp (0.161186)
               

               
               nmm (0.132802)

	1-192, - strand, RNAz p=0.995718
	299-407, - strand, RNAz p=0.758672

	1-457, gnl\|bosTau2\|chr22 (37852628-37853084)
	1-457, gnl\|canFam2\|chr20 (42821132-42820290)
	1-457, gnl\|dasNov1\|scaffold_15492 (15975-16822)
	1-457, gnl\|echTel1\|scaffold_295621 (9493-8608)
	1-457, gnl\|hg17\|chr3 (49427966-49428799)
	1-457, gnl\|Hg17\|chr3 (49428013-49428499)
	1-457, gnl\|loxAfr1\|scaffold_2802 (56151-57086)
	1-457, gnl\|mm7\|chr9 (108037297-108036549)
	1-457, gnl\|oryCun1\|scaffold_187923 (60694-59892)
	1-457, gnl\|panTro1\|chr2 (50954701-50955538)
	1-457, gnl\|rheMac2\|chr2 (87019434-87018598)
	1-457, gnl\|rn3\|chr16_random (1007463-1006735)