Non-Coding RNA Search

Ss1.1-Pig2-120J09.5

Sequence:


               
               CCGAATACTAACTCCAGAGAATCGGAAGCTTGGTCCATAAGATTGGAAAGATCCTGCCAG
AAAAATGCCTGCTGCTGCCAAGCTGGCTATGAGGAGCAATTTGGGAAAAACCCGCTCTCG
GGAGGGCTTTCTGTCTGGCCACATTTGTCTTCCTAATGGTCTTCTTTCCTCGCCAGTGTC
TTTATCCTGGGTTTCTGGCCTCCTGGGTAGATGGCATAATGGGACCCATGGGTTTGGCCT
GCCCTTTGGAGCTCGTAGCCTTGCGTTTCCCGGACGCCTCTCCTGGTGGTTTCTCACCAC
TGGATCCCTCTAAGTAAGGGCAGAGCCCCCTGACTTAGGCTGGACCCATGGTCTCTAGTC
CTTCAGACCCCCTGGGAGGGCGAGGTGGTCGGCTTACATCCCAGAGGAGGAAGTTGAAGC
TCAGCGAGGCTAAGGAACTCCCTAGGGTCACTTAGCCAGTGACAGTGGAGTCAGCACCAT
TCAGACTTGGTGACTCCCAGATGACCTCTCGCCCCAGGCTGCCCCCTCCTGAGAGCCCTG
CCTGCCCTGCCGGAGACCCTCACGCATGCGTGCGGAGGGCCAGCTGTGCATGGAGCTGGC
ATCGTCTCTCAATCTGAGCAGTTCCCAAGGACAGTTAGCATTTCTAGGCTTTCACAAAAT
TGTGCCGTGTTTGGCTGGAGCCTGGTGTTCAGCAGTTCTCTAGCGGGAGGCCAGGGTGGC
ACCTACCACCTTGTCATTGGGACTTCCTGATCCTTGGCTCCTGAATGGTGCTTGGTCTCC
TTGGTGACAACATTCCTGCTTGAGCTGCTGCTGATTTCCTGTCGGCAGTGGCTTGTGGCC
CCAGGCTGGTGTGTGCGGTGCTGCCCTGGGGCAGGAGGCCACCACCTGGCTTCTGAGGCT
CTGACTCCACAGTGGCCTCGTGTGAGGAGCTTTGGCCTGGAATTCTTGGGAGTGTGTGGC
CCAGGGCGGAGACACAAGTGGCCTTAAATCTTTTTTGAAATGTTCTTCTATCCACGGGGA
CCCCTTGGGCCGTAGAGCAGGAAACTTGCGTTAAGT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCGAATACTAACTCCAGAGAATCGGAAGCTTGGTCCATAAGATTGGAAAGATCCTGCCAG
AAAAATGCCTGCTGCTGCCAAGCTGGCTATGAGGAGCAATTTGGGAAAAACCCGCTCTCG
GGAGGGCTTTCTGTCTGGCCACATTTGTCTTCCTAATGGTCTTCTTTCCTCGCCAGTGTC
TTTATCCTGGGTTTCTGGCCTCCTGGGTAGATGGCATAATGGGACCCATGGGTTTGGCCT
GCCCTTTGGAGCTCGTAGCCTTGCGTTTCCCGGACGCCTCTCCTGGTGGTTTCTCACCAC
TGGATCCCTCTAAGTAAGGGCAGAGCCCCCTGACTTAGGCTGGACCCATGGTCTCTAGTC
CTTCAGACCCCCTGGGAGGGCGAGGTGGTCGGCTTACATCCCAGAGGAGGAAGTTGAAGC
TCAGCGAGGCTAAGGAACTCCCTAGGGTCACTTAGCCAGTGACAGTGGAGTCAGCACCAT
TCAGACTTGGTGACTCCCAGATGACCTCTCGCCCCAGGCTGCCCCCTCCTGAGAGCCCTG
CCTGCCCTGCCGGAGACCCTCACGCATGCGTGCGGAGGGCCAGCTGTGCATGGAGCTGGC
ATCGTCTCTCAATCTGAGCAGTTCCCAAGGACAGTTAGCATTTCTAGGCTTTCACAAAAT
TGTGCCGTGTTTGGCTGGAGCCTGGTGTTCAGCAGTTCTCTAGCGGGAGGCCAGGGTGGC
ACCTACCACCTTGTCATTGGGACTTCCTGATCCTTGGCTCCTGAATGGTGCTTGGTCTCC
TTGGTGACAACATTCCTGCTTGAGCTGCTGCTGATTTCCTGTCGGCAGTGGCTTGTGGCC
CCAGGCTGGTGTGTGCGGTGCTGCCCTGGGGCAGGAGGCCACCACCTGGCTTCTGAGGCT
CTGACTCCACAGTGGCCTCGTGTGAGGAGCTTTGGCCTGGAATTCTTGGGAGTGTGTGGC
CCAGGGCGGAGACACAAGTGGCCTTAAATCTTTTTTGAAATGTTCTTCTATCCACGGGGA
CCCCTTGGGCCGTAGAGCAGGAAACTTGCGTTAAGT

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               841-953, + strand, RNAz p=0.721715

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               841-953, + strand, RNAz p=0.721715

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               909-983, + strand, RNAmicro p=0.997749

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               909-983, + strand, RNAmicro p=0.997749

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of NM_004614, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of NM_004614, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-1043, gnl|bosTau2|chr18 (29834118-29833062)
               

               
               1-1043, gnl|Hg17|chr16 (65103411-65102311)
               

               
               1-1043, gnl|Mm7|chr8 (102828796-102827822)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1043, gnl|bosTau2|chr18 (29834118-29833062)
               

               
               1-1043, gnl|Hg17|chr16 (65103411-65102311)
               

               
               1-1043, gnl|Mm7|chr8 (102828796-102827822)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               fty (0.17584)
               

               
               eep (0.122564)
               

               
               eje (0.0988338)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fty (0.17584)
               

               
               eep (0.122564)
               

               
               eje (0.0988338)

	1-1043, gnl\|bosTau2\|chr18 (29834118-29833062)
	1-1043, gnl\|Hg17\|chr16 (65103411-65102311)
	1-1043, gnl\|Mm7\|chr8 (102828796-102827822)