Ss1.1-Pig2-120M07.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CATCGACGACCCGTACAGCGAGTTCATGGTGGAGGAGCACGAGCTGCGCAAGGAGAAGAT CCAGGAGGACTACAACGACAAGTACTGGGACCAGCGCTACACCGTGGTGCAGCGGCAGAT CCCGTCCTTCCTGCAGAAGATGGCCGGCAAGGTGCTCAGCACAGGGAAGTATCTAAACGT GGTCAGAGAATGTGGTCACGATGTCACCTGCCCAGTGGCCAAAGAAGTCGTCTACACACT GAAGGAGCGGGCCTACGTGGAGCAGATCGAGAAGGCCTTCAGCTACGCCAGCAAGGTGCT GCTGGACTTCCTGATGGGGGAGAAGGAGCTGCTGGCCCACTTGAGGTCCATCAAGCGCTA CTTCCTGATGGACCAGGGCGACTTCTTCGTGCACTTCATGGACCTGACGGAGGAGGAGTT GAAGAAGCCGGTGGACGACATCACACCCACCCGCCTGGAGGCGCTGCTGGAGCTGGCCCT GCGCATGAGCACGGCCAACACCGACCCCTTCAAGGATGACCTCAAGATCGACTTGATGCC CCATGACCTCATCACCCAGCTTCTGCGGGTCCTGGCCATCGAGACCCAGCAAGAGAAGGC CATGGTGCATGCTGACCCCACCGAGCTCACGCTCAGCGGCCTGGAGGCCTTCTCCTTCGA CTACGTGGTCACGTGGCCCCTGTCTCTGATCATTAACAGGAAAGCCCTGACCCGCTACCA GATGCTCTTCAGACACATGTTCTACTGCAAGCACGTGGAGCGGCAGCTCTGCAGCGTCTG GATCAGCAACAAGGCCGCCAAGCGGTTCTCCCTGCACTCGGCCAAGTGGTTCGCTGGTGC CTTCACCTTGCGGCAGCGCATGCTCAACTTCGTCCAGAACATCCAGTCCTACATGATGTT CGAAGTGATGGAGCCGACCTGGCACGTCCTGGAGCAGAACCTGAGATCCGCCTCCAACAT CGACGACGTGCTGGGGCACCACGCGAGCTTCCTGGACAACTGCCTCAAGGACTGCATGCT CACCAACCCCGAGCTGCTGCGCGTCTTCTCCAAGCTCATGTCCGTGTGCGTCATGTTCAC CAACTGCCTGCAGAGATTCACGCAGAGCATGAAGCTGGACAGCGAGCTGGGCCACCCGGC TCTGGAGCCTGGCGCGATGCTGGGGCCGCCCACGGAGGCCGAGCGGGCTGAGGAGCGGGC CCGGAAGGAGCTCGCCCGGAAGTGCCTGGCCGAGCACGTGGACGCTCCGCAGCTGGCCTC CAGCTTTGAGGCCACCATCACCAAGTTCGATAAGAACTTCTCAGCGCACCTGCTCGACCT CCTGGCCCGGCTGAGCATCTACAGCACCAGCGACTGCGAGCACGGCATGGCCAGCGTCAT CTCCAGGCTTGACTTTAACGGCTTCTACACCGAGCGGCTAGAGCGCTTGTCCGCAGAGAG GAGCCAGAAGGCAGCCCCCCCAGTGCCCGGGCCTCGGGGGCCCCCAGCTCTAGTGCCCAG GGTCGCCGTCACCGCACAGTGAAGCTGCAGGTGGATGAGTTCAGAGGTCTTTCATCAGGA GTTCCTGGAACTCGTGTGCGTGTGTTCTTGTTTAAGCATAAAGTCTAG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CATCGACGACCCGTACAGCGAGTTCATGGTGGAGGAGCACGAGCTGCGCAAGGAGAAGAT CCAGGAGGACTACAACGACAAGTACTGGGACCAGCGCTACACCGTGGTGCAGCGGCAGAT CCCGTCCTTCCTGCAGAAGATGGCCGGCAAGGTGCTCAGCACAGGGAAGTATCTAAACGT GGTCAGAGAATGTGGTCACGATGTCACCTGCCCAGTGGCCAAAGAAGTCGTCTACACACT GAAGGAGCGGGCCTACGTGGAGCAGATCGAGAAGGCCTTCAGCTACGCCAGCAAGGTGCT GCTGGACTTCCTGATGGGGGAGAAGGAGCTGCTGGCCCACTTGAGGTCCATCAAGCGCTA CTTCCTGATGGACCAGGGCGACTTCTTCGTGCACTTCATGGACCTGACGGAGGAGGAGTT GAAGAAGCCGGTGGACGACATCACACCCACCCGCCTGGAGGCGCTGCTGGAGCTGGCCCT GCGCATGAGCACGGCCAACACCGACCCCTTCAAGGATGACCTCAAGATCGACTTGATGCC CCATGACCTCATCACCCAGCTTCTGCGGGTCCTGGCCATCGAGACCCAGCAAGAGAAGGC CATGGTGCATGCTGACCCCACCGAGCTCACGCTCAGCGGCCTGGAGGCCTTCTCCTTCGA CTACGTGGTCACGTGGCCCCTGTCTCTGATCATTAACAGGAAAGCCCTGACCCGCTACCA GATGCTCTTCAGACACATGTTCTACTGCAAGCACGTGGAGCGGCAGCTCTGCAGCGTCTG GATCAGCAACAAGGCCGCCAAGCGGTTCTCCCTGCACTCGGCCAAGTGGTTCGCTGGTGC CTTCACCTTGCGGCAGCGCATGCTCAACTTCGTCCAGAACATCCAGTCCTACATGATGTT CGAAGTGATGGAGCCGACCTGGCACGTCCTGGAGCAGAACCTGAGATCCGCCTCCAACAT CGACGACGTGCTGGGGCACCACGCGAGCTTCCTGGACAACTGCCTCAAGGACTGCATGCT CACCAACCCCGAGCTGCTGCGCGTCTTCTCCAAGCTCATGTCCGTGTGCGTCATGTTCAC CAACTGCCTGCAGAGATTCACGCAGAGCATGAAGCTGGACAGCGAGCTGGGCCACCCGGC TCTGGAGCCTGGCGCGATGCTGGGGCCGCCCACGGAGGCCGAGCGGGCTGAGGAGCGGGC CCGGAAGGAGCTCGCCCGGAAGTGCCTGGCCGAGCACGTGGACGCTCCGCAGCTGGCCTC CAGCTTTGAGGCCACCATCACCAAGTTCGATAAGAACTTCTCAGCGCACCTGCTCGACCT CCTGGCCCGGCTGAGCATCTACAGCACCAGCGACTGCGAGCACGGCATGGCCAGCGTCAT CTCCAGGCTTGACTTTAACGGCTTCTACACCGAGCGGCTAGAGCGCTTGTCCGCAGAGAG GAGCCAGAAGGCAGCCCCCCCAGTGCCCGGGCCTCGGGGGCCCCCAGCTCTAGTGCCCAG GGTCGCCGTCACCGCACAGTGAAGCTGCAGGTGGATGAGTTCAGAGGTCTTTCATCAGGA GTTCCTGGAACTCGTGTGCGTGTGTTCTTGTTTAAGCATAAAGTCTAG |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 409-526, - strand, RNAz p=0.776114 | |
| 716-833, - strand, RNAz p=0.805577 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 409-526, - strand, RNAz p=0.776114 | |
| 716-833, - strand, RNAz p=0.805577 |
| Aligned organism(s): 58 entry(ies) | More info |
| Aligned organism(s): 58 entry(ies) | Help | Less info |
| 11-165, gnl|bosTau2|chr26 (34896599-34896753) | |
| 11-165, gnl|canFam2|chr28 (43866247-43866427) | |
| 11-165, gnl|danRer3|chr12 (5470097-5469928) | |
| 11-165, gnl|dasNov1|scaffold_134693 (1490-1316) | |
| 11-165, gnl|echTel1|scaffold_273397 (7250-7399) | |
| 11-165, gnl|fr1|chrUn (159522970-159523132) | |
| 11-165, gnl|galGal2|chr6 (8709181-8709333) | |
| 11-165, gnl|hg17|chr10 (134992208-134992387) | |
| 11-165, gnl|Hg17|chr10 (134992363-134992208) | |
| 11-165, gnl|loxAfr1|scaffold_45997 (1432-1601) | |
| 11-165, gnl|mm7|chr7 (136419801-136419965) | |
| 11-165, gnl|Mm7|chr7 (136419955-136419801) | |
| 11-165, gnl|monDom2|scaffold_384 (18279-18446) | |
| 11-165, gnl|oryCun1|scaffold_176317 (95864-95689) | |
| 11-165, gnl|panTro1|chr8 (137820082-137820261) | |
| 11-165, gnl|rheMac2|chr9 (132940199-132940378) | |
| 11-165, gnl|rn3|chr1 (199955547-199955723) | |
| 11-165, gnl|tetNig1|chr2 (1583339-1583190) | |
| 11-165, gnl|xenTro1|scaffold_379 (1046233-1046385) | |
| 344-526, gnl|bosTau2|chr26 (34898778-34898960) | |
| 344-526, gnl|canFam2|chr28 (43863862-43864072) | |
| 344-526, gnl|danRer3|chr12 (5474982-5474789) | |
| 344-526, gnl|dasNov1|scaffold_134693 (3534-3327) | |
| 344-526, gnl|echTel1|scaffold_273397 (5901-6111) | |
| 344-526, gnl|fr1|chrUn (159522318-159522517) | |
| 344-526, gnl|galGal2|chr6 (8707272-8707479) | |
| 344-526, gnl|hg17|chr10 (134990499-134990706) | |
| 344-526, gnl|Hg17|chr10 (134990696-134990514) | |
| 344-526, gnl|mm7|chr7 (136418580-136418778) | |
| 344-526, gnl|Mm7|chr7 (136418768-136418586) | |
| 344-526, gnl|monDom2|scaffold_384 (367-583) | |
| 344-526, gnl|oryCun1|scaffold_93858 (1175-968) | |
| 344-526, gnl|rn3|chr1 (199954285-199954485) | |
| 344-526, gnl|tetNig1|chr2 (1583992-1583795) | |
| 344-526, gnl|xenTro1|scaffold_379 (1026311-1026499) | |
| 696-833, gnl|bosTau2|chr26 (34901028-34901165) | |
| 696-833, gnl|canFam2|chr28 (43862558-43862698) | |
| 696-833, gnl|danRer3|chr12 (5481211-5481073) | |
| 696-833, gnl|dasNov1|scaffold_204001 (907-1047) | |
| 696-833, gnl|echTel1|scaffold_273397 (4249-4389) | |
| 696-833, gnl|fr1|chrUn (159521612-159521752) | |
| 696-833, gnl|galGal2|chr6 (8705073-8705215) | |
| 696-833, gnl|hg17|chr10 (134987464-134987604) | |
| 696-833, gnl|Hg17|chr10 (134987602-134987465) | |
| 696-833, gnl|mm7|chr7 (136414797-136414936) | |
| 696-833, gnl|Mm7|chr7 (136414934-136414797) | |
| 696-833, gnl|oryCun1|scaffold_93858 (4094-3955) | |
| 696-833, gnl|panTro1|chr8 (137814683-137814823) | |
| 696-833, gnl|rheMac2|chr9 (132934851-132934991) | |
| 696-833, gnl|rn3|chr1 (199950726-199950865) | |
| 696-833, gnl|tetNig1|chr2 (1584623-1584483) | |
| 696-833, gnl|xenTro1|scaffold_379 (1013338-1013478) | |
| 950-1093, gnl|bosTau2|chr26 (34901899-34902042) | |
| 950-1093, gnl|Hg17|chr10 (134985606-134985463) | |
| 950-1093, gnl|Mm7|chr7 (136412699-136412556) | |
| 1221-1387, gnl|bosTau2|chr26 (34903002-34903168) | |
| 1221-1387, gnl|Hg17|chr10 (134983823-134983657) | |
| 1221-1387, gnl|Mm7|chr7 (136410734-136410568) |
| Aligned organism(s): 58 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 11-165, gnl|bosTau2|chr26 (34896599-34896753) | |
| 11-165, gnl|canFam2|chr28 (43866247-43866427) | |
| 11-165, gnl|danRer3|chr12 (5470097-5469928) | |
| 11-165, gnl|dasNov1|scaffold_134693 (1490-1316) | |
| 11-165, gnl|echTel1|scaffold_273397 (7250-7399) | |
| 11-165, gnl|fr1|chrUn (159522970-159523132) | |
| 11-165, gnl|galGal2|chr6 (8709181-8709333) | |
| 11-165, gnl|hg17|chr10 (134992208-134992387) | |
| 11-165, gnl|Hg17|chr10 (134992363-134992208) | |
| 11-165, gnl|loxAfr1|scaffold_45997 (1432-1601) | |
| 11-165, gnl|mm7|chr7 (136419801-136419965) | |
| 11-165, gnl|Mm7|chr7 (136419955-136419801) | |
| 11-165, gnl|monDom2|scaffold_384 (18279-18446) | |
| 11-165, gnl|oryCun1|scaffold_176317 (95864-95689) | |
| 11-165, gnl|panTro1|chr8 (137820082-137820261) | |
| 11-165, gnl|rheMac2|chr9 (132940199-132940378) | |
| 11-165, gnl|rn3|chr1 (199955547-199955723) | |
| 11-165, gnl|tetNig1|chr2 (1583339-1583190) | |
| 11-165, gnl|xenTro1|scaffold_379 (1046233-1046385) | |
| 344-526, gnl|bosTau2|chr26 (34898778-34898960) | |
| 344-526, gnl|canFam2|chr28 (43863862-43864072) | |
| 344-526, gnl|danRer3|chr12 (5474982-5474789) | |
| 344-526, gnl|dasNov1|scaffold_134693 (3534-3327) | |
| 344-526, gnl|echTel1|scaffold_273397 (5901-6111) | |
| 344-526, gnl|fr1|chrUn (159522318-159522517) | |
| 344-526, gnl|galGal2|chr6 (8707272-8707479) | |
| 344-526, gnl|hg17|chr10 (134990499-134990706) | |
| 344-526, gnl|Hg17|chr10 (134990696-134990514) | |
| 344-526, gnl|mm7|chr7 (136418580-136418778) | |
| 344-526, gnl|Mm7|chr7 (136418768-136418586) | |
| 344-526, gnl|monDom2|scaffold_384 (367-583) | |
| 344-526, gnl|oryCun1|scaffold_93858 (1175-968) | |
| 344-526, gnl|rn3|chr1 (199954285-199954485) | |
| 344-526, gnl|tetNig1|chr2 (1583992-1583795) | |
| 344-526, gnl|xenTro1|scaffold_379 (1026311-1026499) | |
| 696-833, gnl|bosTau2|chr26 (34901028-34901165) | |
| 696-833, gnl|canFam2|chr28 (43862558-43862698) | |
| 696-833, gnl|danRer3|chr12 (5481211-5481073) | |
| 696-833, gnl|dasNov1|scaffold_204001 (907-1047) | |
| 696-833, gnl|echTel1|scaffold_273397 (4249-4389) | |
| 696-833, gnl|fr1|chrUn (159521612-159521752) | |
| 696-833, gnl|galGal2|chr6 (8705073-8705215) | |
| 696-833, gnl|hg17|chr10 (134987464-134987604) | |
| 696-833, gnl|Hg17|chr10 (134987602-134987465) | |
| 696-833, gnl|mm7|chr7 (136414797-136414936) | |
| 696-833, gnl|Mm7|chr7 (136414934-136414797) | |
| 696-833, gnl|oryCun1|scaffold_93858 (4094-3955) | |
| 696-833, gnl|panTro1|chr8 (137814683-137814823) | |
| 696-833, gnl|rheMac2|chr9 (132934851-132934991) | |
| 696-833, gnl|rn3|chr1 (199950726-199950865) | |
| 696-833, gnl|tetNig1|chr2 (1584623-1584483) | |
| 696-833, gnl|xenTro1|scaffold_379 (1013338-1013478) | |
| 950-1093, gnl|bosTau2|chr26 (34901899-34902042) | |
| 950-1093, gnl|Hg17|chr10 (134985606-134985463) | |
| 950-1093, gnl|Mm7|chr7 (136412699-136412556) | |
| 1221-1387, gnl|bosTau2|chr26 (34903002-34903168) | |
| 1221-1387, gnl|Hg17|chr10 (134983823-134983657) | |
| 1221-1387, gnl|Mm7|chr7 (136410734-136410568) |
| Expressed library(ies): 21 entry(ies) | More info |
| Expressed library(ies): 21 entry(ies) | Help | Less info |
| fcc (0.39557) | |
| mcp (0.341297) | |
| hlv (0.278513) | |
| fce (0.271592) | |
| cov (0.264306) | |
| cly (0.241284) | |
| ecc (0.23007) | |
| eje (0.197668) | |
| nep (0.183925) | |
| duo (0.172801) | |
| eye (0.170503) | |
| nje (0.16592) | |
| csp (0.161186) | |
| eli (0.151814) | |
| cag (0.151194) | |
| hyp (0.142837) | |
| lnt (0.142308) | |
| cst (0.140036) | |
| tra (0.123092) | |
| med (0.116252) | |
| jca (0.11396) |
| Expressed library(ies): 21 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| fcc (0.39557) | |
| mcp (0.341297) | |
| hlv (0.278513) | |
| fce (0.271592) | |
| cov (0.264306) | |
| cly (0.241284) | |
| ecc (0.23007) | |
| eje (0.197668) | |
| nep (0.183925) | |
| duo (0.172801) | |
| eye (0.170503) | |
| nje (0.16592) | |
| csp (0.161186) | |
| eli (0.151814) | |
| cag (0.151194) | |
| hyp (0.142837) | |
| lnt (0.142308) | |
| cst (0.140036) | |
| tra (0.123092) | |
| med (0.116252) | |
| jca (0.11396) |