Non-Coding RNA Search

Ss1.1-Pig2-120M10.5

Sequence:


               
               AACAACCCCAAATACGTCCTGAGGAACTACATTGCGCAGAACGCCATCGAGGCCGCCGAG
AACGGCGACTTCTCAGAGGTGCGGCGGGTGCTGAAGCTGCTGGAGACCCCTTATCACAGG
GAGGGGGAGGCCGCCGAGCCTGCGGAGCCTGAGGCGGCCGAGGGGCGGCTCTCCTACAGC
AGCAAACCTCCGCTCTGGGCAGCAGAACTGTGCGTGACATGATCCTCGTAACCGCCTTGG
AGGCCCCTTCCCAGGGAGGCCCCGAGGCCGGAGTCCTCGAGTCCACGAGGCGGCGCCCCC
CCAACCCGTCTCTCATGACGCCAGAGACGTCCAGTCGGGATCTGACCCGTCTCTGTCTGA
TGCCGACTCGGCAGCGCAGCCCAGCCCCGCGCTCGCGCTCCCCGACATGCTGCTTTGCAC
AAGGCCAGCTCGGCAGAGGGGCCCAGTGGGTTGACACGCAGCCCGCGCCCACCTCGCCAG
CCTAGGCAGGGAGACACCGCTCCCAATAAACCAGCCGCTTCCTCGGAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGGGGGGG
GGGGGTTTTTAAATTTTTTTGGGGGGGGGGGAAATTTCCCCCCCCCCTTTTTTTTTTAAA
AAGGGGGGCCCTTTGGGGGGGTTTTTTAAAAGGGGGGGGGGGGGGGGT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AACAACCCCAAATACGTCCTGAGGAACTACATTGCGCAGAACGCCATCGAGGCCGCCGAG
AACGGCGACTTCTCAGAGGTGCGGCGGGTGCTGAAGCTGCTGGAGACCCCTTATCACAGG
GAGGGGGAGGCCGCCGAGCCTGCGGAGCCTGAGGCGGCCGAGGGGCGGCTCTCCTACAGC
AGCAAACCTCCGCTCTGGGCAGCAGAACTGTGCGTGACATGATCCTCGTAACCGCCTTGG
AGGCCCCTTCCCAGGGAGGCCCCGAGGCCGGAGTCCTCGAGTCCACGAGGCGGCGCCCCC
CCAACCCGTCTCTCATGACGCCAGAGACGTCCAGTCGGGATCTGACCCGTCTCTGTCTGA
TGCCGACTCGGCAGCGCAGCCCAGCCCCGCGCTCGCGCTCCCCGACATGCTGCTTTGCAC
AAGGCCAGCTCGGCAGAGGGGCCCAGTGGGTTGACACGCAGCCCGCGCCCACCTCGCCAG
CCTAGGCAGGGAGACACCGCTCCCAATAAACCAGCCGCTTCCTCGGAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGGGGGGG
GGGGGTTTTTAAATTTTTTTGGGGGGGGGGGAAATTTCCCCCCCCCCTTTTTTTTTTAAA
AAGGGGGGCCCTTTGGGGGGGTTTTTTAAAAGGGGGGGGGGGGGGGGT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61819095|ref|XP_601594.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61819095|ref|XP_601594.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               207-325, - strand, RNAz p=0.946991

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               207-325, - strand, RNAz p=0.946991

Aligned organism(s): 1 entry(ies)

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Aligned organism(s): 1 entry(ies)

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               127-524, gnl|bosTau2|chr5 (76040071-76039692)

Aligned organism(s): 1 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               127-524, gnl|bosTau2|chr5 (76040071-76039692)

Expressed library(ies): 5 entry(ies)

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Expressed library(ies): 5 entry(ies)

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               col (0.195008)
               

               
               duo (0.172801)
               

               
               nje (0.16592)
               

               
               cly (0.120642)
               

               
               jej (0.0989218)

Expressed library(ies): 5 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               col (0.195008)
               

               
               duo (0.172801)
               

               
               nje (0.16592)
               

               
               cly (0.120642)
               

               
               jej (0.0989218)

	col (0.195008)
	duo (0.172801)
	nje (0.16592)
	cly (0.120642)
	jej (0.0989218)