Ss1.1-Pig2-120P02.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GGACGCGTGGGCGGAGACGCCAGCCTCCGTGCATCCCACTGTGGTTCGGGGGTGGTGGTT TTTAAGTACGGAAGGGCCCTTGGTTCCACCGGAGGAATCTGCCGTGGGTCCCCGAGTTCC TGGAGCTGTCTTCCGTATACCTGAGTCAGACCAGAGCACAGTCCGAAGGGCGGATGAGAA GACTGAGTCCTACAAACATTAAATGATTTTCTCAAGCAGCCTCAGTGCATAAGAATTGGG GTCCAGGCCACCACTCCGTCAGCCTGCCTCTAGGTGTGAAGGAGCGAGTGCCTGATCAGA ATGGCTGTGGGATGGTTTTACCTGTCGGCCCTGGCGCTGTTCTCCCTGGGCTCCATGTGC ATCCTCTCCACCATCTATTGGATGCGGTACTGGCACAAAGGCTTTGCCTGGGATGGCACC ATACTCACGTTCAACTGGCACCCGGTGCTCATGGTGACTGGCATGGTGGTGCTCTACAGT GCTGCGTCGCTGGCGTACCGCCTGCCCCAGTCATGGGTAGGGCCCAAGCTGCCCTGGAAG TTGGGCCACGCAGCCATGCACCTGATGGCCTTCATCCTGACTGTGCTGGGGCTGGCGGCC GTCTTTAACTTTCACAACCACGAGAAGATCCCCAACCTCTACTCCCTGCACAGCTGGCTG GGCATCACCACCGTCTTCCTCTTCGCCTGCCAGTGGTTCTTGGGCTTTGTGGTCTTTCTG CTGCCCTGGGCGTCTGTGCGGCTGCGCAGCCTCCTTAAACCCATCCACGTCTTCTTTGGA GCCTCCATTCTCTCTCTGGCCATTGCGTCTGTCATTTCCGGCATCAATGAGAAGCTCTTC TTCAGTTTGAAAAATGGCACCACTTCATACTCCAACCTGCCCGATGAGGCCGTCTTCGCG AACAGTGCGGGGATGCTGGTGGTGGTCTTTGGGCTGCTGGTGCTCTAT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GGACGCGTGGGCGGAGACGCCAGCCTCCGTGCATCCCACTGTGGTTCGGGGGTGGTGGTT TTTAAGTACGGAAGGGCCCTTGGTTCCACCGGAGGAATCTGCCGTGGGTCCCCGAGTTCC TGGAGCTGTCTTCCGTATACCTGAGTCAGACCAGAGCACAGTCCGAAGGGCGGATGAGAA GACTGAGTCCTACAAACATTAAATGATTTTCTCAAGCAGCCTCAGTGCATAAGAATTGGG GTCCAGGCCACCACTCCGTCAGCCTGCCTCTAGGTGTGAAGGAGCGAGTGCCTGATCAGA ATGGCTGTGGGATGGTTTTACCTGTCGGCCCTGGCGCTGTTCTCCCTGGGCTCCATGTGC ATCCTCTCCACCATCTATTGGATGCGGTACTGGCACAAAGGCTTTGCCTGGGATGGCACC ATACTCACGTTCAACTGGCACCCGGTGCTCATGGTGACTGGCATGGTGGTGCTCTACAGT GCTGCGTCGCTGGCGTACCGCCTGCCCCAGTCATGGGTAGGGCCCAAGCTGCCCTGGAAG TTGGGCCACGCAGCCATGCACCTGATGGCCTTCATCCTGACTGTGCTGGGGCTGGCGGCC GTCTTTAACTTTCACAACCACGAGAAGATCCCCAACCTCTACTCCCTGCACAGCTGGCTG GGCATCACCACCGTCTTCCTCTTCGCCTGCCAGTGGTTCTTGGGCTTTGTGGTCTTTCTG CTGCCCTGGGCGTCTGTGCGGCTGCGCAGCCTCCTTAAACCCATCCACGTCTTCTTTGGA GCCTCCATTCTCTCTCTGGCCATTGCGTCTGTCATTTCCGGCATCAATGAGAAGCTCTTC TTCAGTTTGAAAAATGGCACCACTTCATACTCCAACCTGCCCGATGAGGCCGTCTTCGCG AACAGTGCGGGGATGCTGGTGGTGGTCTTTGGGCTGCTGGTGCTCTAT |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 484-602, + strand, RNAz p=0.542662 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 484-602, + strand, RNAz p=0.542662 |
| Aligned organism(s): 31 entry(ies) | More info |
| Aligned organism(s): 31 entry(ies) | Help | Less info |
| 173-289, gnl|bosTau2|chr29 (30923752-30923638) | |
| 173-289, gnl|canFam2|chr18 (58072733-58072464) | |
| 173-289, gnl|dasNov1|scaffold_3113 (75786-76024) | |
| 173-289, gnl|echTel1|scaffold_323026 (4962-5210) | |
| 173-289, gnl|hg17|chr11 (60881663-60881891) | |
| 173-289, gnl|Hg17|chr11 (60881877-60881772) | |
| 173-289, gnl|loxAfr1|scaffold_45925 (11726-12011) | |
| 173-289, gnl|mm7|chr19 (10260819-10260575) | |
| 173-289, gnl|Mm7|chr19 (10260587-10260695) | |
| 173-289, gnl|oryCun1|scaffold_205944 (80129-80375) | |
| 173-289, gnl|panTro1|chr9 (61804209-61804437) | |
| 173-289, gnl|rheMac2|chr14 (12726190-12725949) | |
| 173-289, gnl|rn3|chr1 (213229821-213229577) | |
| 484-693, gnl|bosTau2|chr29 (30918298-30918089) | |
| 484-693, gnl|canFam2|chr18 (58075333-58075169) | |
| 484-693, gnl|danRer3|chr5 (21002752-21002919) | |
| 484-693, gnl|dasNov1|scaffold_3113 (72552-72726) | |
| 484-693, gnl|echTel1|scaffold_323026 (2295-2457) | |
| 484-693, gnl|fr1|chrUn (80272261-80272435) | |
| 484-693, gnl|galGal2|chr5 (3098639-3098815) | |
| 484-693, gnl|hg17|chr11 (60877811-60877985) | |
| 484-693, gnl|Hg17|chr11 (60878041-60877832) | |
| 484-693, gnl|loxAfr1|scaffold_12344 (96502-96671) | |
| 484-693, gnl|mm7|chr19 (10265538-10265364) | |
| 484-693, gnl|Mm7|chr19 (10265306-10265515) | |
| 484-693, gnl|monDom2|scaffold_33 (28373295-28373460) | |
| 484-693, gnl|oryCun1|scaffold_205944 (77338-77510) | |
| 484-693, gnl|panTro1|chr9 (61800362-61800536) | |
| 484-693, gnl|rheMac2|chr14 (12730086-12729914) | |
| 484-693, gnl|rn3|chr1 (213234557-213234384) | |
| 484-693, gnl|tetNig1|chr2 (11469012-11469172) |
| Aligned organism(s): 31 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 173-289, gnl|bosTau2|chr29 (30923752-30923638) | |
| 173-289, gnl|canFam2|chr18 (58072733-58072464) | |
| 173-289, gnl|dasNov1|scaffold_3113 (75786-76024) | |
| 173-289, gnl|echTel1|scaffold_323026 (4962-5210) | |
| 173-289, gnl|hg17|chr11 (60881663-60881891) | |
| 173-289, gnl|Hg17|chr11 (60881877-60881772) | |
| 173-289, gnl|loxAfr1|scaffold_45925 (11726-12011) | |
| 173-289, gnl|mm7|chr19 (10260819-10260575) | |
| 173-289, gnl|Mm7|chr19 (10260587-10260695) | |
| 173-289, gnl|oryCun1|scaffold_205944 (80129-80375) | |
| 173-289, gnl|panTro1|chr9 (61804209-61804437) | |
| 173-289, gnl|rheMac2|chr14 (12726190-12725949) | |
| 173-289, gnl|rn3|chr1 (213229821-213229577) | |
| 484-693, gnl|bosTau2|chr29 (30918298-30918089) | |
| 484-693, gnl|canFam2|chr18 (58075333-58075169) | |
| 484-693, gnl|danRer3|chr5 (21002752-21002919) | |
| 484-693, gnl|dasNov1|scaffold_3113 (72552-72726) | |
| 484-693, gnl|echTel1|scaffold_323026 (2295-2457) | |
| 484-693, gnl|fr1|chrUn (80272261-80272435) | |
| 484-693, gnl|galGal2|chr5 (3098639-3098815) | |
| 484-693, gnl|hg17|chr11 (60877811-60877985) | |
| 484-693, gnl|Hg17|chr11 (60878041-60877832) | |
| 484-693, gnl|loxAfr1|scaffold_12344 (96502-96671) | |
| 484-693, gnl|mm7|chr19 (10265538-10265364) | |
| 484-693, gnl|Mm7|chr19 (10265306-10265515) | |
| 484-693, gnl|monDom2|scaffold_33 (28373295-28373460) | |
| 484-693, gnl|oryCun1|scaffold_205944 (77338-77510) | |
| 484-693, gnl|panTro1|chr9 (61800362-61800536) | |
| 484-693, gnl|rheMac2|chr14 (12730086-12729914) | |
| 484-693, gnl|rn3|chr1 (213234557-213234384) | |
| 484-693, gnl|tetNig1|chr2 (11469012-11469172) |
| Expressed library(ies): 5 entry(ies) | More info |
| Expressed library(ies): 5 entry(ies) | Help | Less info |
| nje (0.16592) | |
| nco (0.161734) | |
| pla (0.133672) | |
| ute (0.132784) | |
| eru (0.120048) |
| Expressed library(ies): 5 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| nje (0.16592) | |
| nco (0.161734) | |
| pla (0.133672) | |
| ute (0.132784) | |
| eru (0.120048) |