Non-Coding RNA Search

Ss1.1-Pig2-121E05.5

Sequence:


               
               AGCTCCACACGCTCTCAGACTCCCTGTGGGGACCTGACGACTCTCGGCTACAGCTGAACT
TCCGAGCAACACAACCTTTGAATGGGCGAATAATCGAGGCCTCCTTCTCCACTGAGGTGG
ACAGCAGCCCTAGGGCCGTTGAGCCAGTCCACCTGAATTCCTGTCTCGCTGCGGGTGACA
TCCTGGCCCTGGTTTTTGGCCTCCTCTTTGCTGTTACCAGTGTCGTCCTCCTTGTGCAAA
TGAGAAGGCAGCAAAGACACTCAAGTGGAACCAAAGGGGGTGTTAGCTACCACCCAGCAG
AGGTCACCGAGACTGTTGCCTAGAGGCCTGCAACTTGGAGAGGGTGCAGAGAAGCCAGCC
AGAAGAATCTGAGGGGGAACTGGACACCCTGTCTTGCCTGTAACACTACTTTCTTTTTAA
CCTCCAAGGATTTTTTTTTAAAGTAAATATTTATAATAAAATACGTGGTAGGCACCCTTG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGCTCCACACGCTCTCAGACTCCCTGTGGGGACCTGACGACTCTCGGCTACAGCTGAACT
TCCGAGCAACACAACCTTTGAATGGGCGAATAATCGAGGCCTCCTTCTCCACTGAGGTGG
ACAGCAGCCCTAGGGCCGTTGAGCCAGTCCACCTGAATTCCTGTCTCGCTGCGGGTGACA
TCCTGGCCCTGGTTTTTGGCCTCCTCTTTGCTGTTACCAGTGTCGTCCTCCTTGTGCAAA
TGAGAAGGCAGCAAAGACACTCAAGTGGAACCAAAGGGGGTGTTAGCTACCACCCAGCAG
AGGTCACCGAGACTGTTGCCTAGAGGCCTGCAACTTGGAGAGGGTGCAGAGAAGCCAGCC
AGAAGAATCTGAGGGGGAACTGGACACCCTGTCTTGCCTGTAACACTACTTTCTTTTTAA
CCTCCAAGGATTTTTTTTTAAAGTAAATATTTATAATAAAATACGTGGTAGGCACCCTTG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61864595|ref|XP_589350.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61864595|ref|XP_589350.1|

Aligned organism(s): 5 entry(ies)

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Aligned organism(s): 5 entry(ies)

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               1-147, gnl|bosTau2|chr8 (28420053-28420199)
               

               
               1-147, gnl|Hg17|chr9 (35669849-35669995)
               

               
               1-147, gnl|Mm7|chr4 (43525954-43526091)
               


               
               255-474, gnl|bosTau2|chr8 (28420980-28421196)
               

               
               255-474, gnl|Hg17|chr9 (35670954-35671169)

Aligned organism(s): 5 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-147, gnl|bosTau2|chr8 (28420053-28420199)
               

               
               1-147, gnl|Hg17|chr9 (35669849-35669995)
               

               
               1-147, gnl|Mm7|chr4 (43525954-43526091)
               


               
               255-474, gnl|bosTau2|chr8 (28420980-28421196)
               

               
               255-474, gnl|Hg17|chr9 (35670954-35671169)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               cst (0.280073)
               

               
               tes (0.207814)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cst (0.280073)
               

               
               tes (0.207814)

	1-147, gnl\|bosTau2\|chr8 (28420053-28420199)
	1-147, gnl\|Hg17\|chr9 (35669849-35669995)
	1-147, gnl\|Mm7\|chr4 (43525954-43526091)

	255-474, gnl\|bosTau2\|chr8 (28420980-28421196)
	255-474, gnl\|Hg17\|chr9 (35670954-35671169)