Non-Coding RNA Search

Ss1.1-Pig2-121F23.5

Sequence:


               
               GGACCTGCATCCTGGAGCCCACTGGAAAAGGCAAACCCCCTGGCTGCCGGGGCCTCTCGG
CCAAGACTAAGACCGCTCTGGGCGTGGGGCTCAATGGGACGGTGGGGCCAAGAGTGAAGC
GAGCAGGGCCCCTGGACTGCCGGGGCCCCCCTCATCCGCCCCCTACGCCGGTCAAGGCTT
CTCAGCTGGACAGCCAGGGAGGGGCTGGACTCACAGCCAAGGCCCTGCCGACCAGCTGCC
TCTCCGAGGAAGAGGTAGCCAAGAAGCGGAAAAACCTGGCCACTTACTGCCGGCCAGTGA
AGGCCAAGCACTGCCAGGCTGGTGCCCCCGCCGACGCGGCCTGCTCCGTGCGCCGCAAGA
AGCCGGGTCCGGCCCTGGCCTTTGAGGACAAGTGTTCTCCACTGAAGTCAAAAGCCCATT
AACGAGAAAGTGCCTGCCCACTGCGATGGAGACGCCAGCACCTCCTCCCCTCCAGATCCG
GGCCCCAGGCTGCTGCCGCTTTTTATAACTTTATATTATTTTTTTTAACCTCCCCTCCAG
ATCCGGGCCCCAGGCTGCTGCCGCTTTTTATAACTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGACCTGCATCCTGGAGCCCACTGGAAAAGGCAAACCCCCTGGCTGCCGGGGCCTCTCGG
CCAAGACTAAGACCGCTCTGGGCGTGGGGCTCAATGGGACGGTGGGGCCAAGAGTGAAGC
GAGCAGGGCCCCTGGACTGCCGGGGCCCCCCTCATCCGCCCCCTACGCCGGTCAAGGCTT
CTCAGCTGGACAGCCAGGGAGGGGCTGGACTCACAGCCAAGGCCCTGCCGACCAGCTGCC
TCTCCGAGGAAGAGGTAGCCAAGAAGCGGAAAAACCTGGCCACTTACTGCCGGCCAGTGA
AGGCCAAGCACTGCCAGGCTGGTGCCCCCGCCGACGCGGCCTGCTCCGTGCGCCGCAAGA
AGCCGGGTCCGGCCCTGGCCTTTGAGGACAAGTGTTCTCCACTGAAGTCAAAAGCCCATT
AACGAGAAAGTGCCTGCCCACTGCGATGGAGACGCCAGCACCTCCTCCCCTCCAGATCCG
GGCCCCAGGCTGCTGCCGCTTTTTATAACTTTATATTATTTTTTTTAACCTCCCCTCCAG
ATCCGGGCCCCAGGCTGCTGCCGCTTTTTATAACTT

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               120-319, - strand, RNAz p=0.960364
               

               
               211-329, - strand, RNAz p=0.532291

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               120-319, - strand, RNAz p=0.960364
               

               
               211-329, - strand, RNAz p=0.532291

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               148-273, - strand, RNAmicro p=0.991667

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               148-273, - strand, RNAmicro p=0.991667

Aligned organism(s): 13 entry(ies)

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Aligned organism(s): 13 entry(ies)

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               1-417, gnl|bosTau2|chr3 (25970676-25970260)
               

               
               1-417, gnl|canFam2|chr6 (45428030-45427317)
               

               
               1-417, gnl|dasNov1|scaffold_118923 (3781-3099)
               

               
               1-417, gnl|echTel1|scaffold_277841 (2401-3114)
               

               
               1-417, gnl|hg17|chr1 (109745587-109746300)
               

               
               1-417, gnl|Hg17|chr1 (109745975-109746391)
               

               
               1-417, gnl|mm7|chr3 (108022332-108021619)
               

               
               1-417, gnl|Mm7|chr3 (108021942-108021526)
               

               
               1-417, gnl|monDom2|scaffold_0 (7158912-7158202)
               

               
               1-417, gnl|oryCun1|scaffold_208853 (28215-28928)
               

               
               1-417, gnl|panTro1|chr1 (108675836-108676549)
               

               
               1-417, gnl|rheMac2|chr1 (112550122-112550835)
               

               
               1-417, gnl|rn3|chr2 (203732254-203731541)

Aligned organism(s): 13 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-417, gnl|bosTau2|chr3 (25970676-25970260)
               

               
               1-417, gnl|canFam2|chr6 (45428030-45427317)
               

               
               1-417, gnl|dasNov1|scaffold_118923 (3781-3099)
               

               
               1-417, gnl|echTel1|scaffold_277841 (2401-3114)
               

               
               1-417, gnl|hg17|chr1 (109745587-109746300)
               

               
               1-417, gnl|Hg17|chr1 (109745975-109746391)
               

               
               1-417, gnl|mm7|chr3 (108022332-108021619)
               

               
               1-417, gnl|Mm7|chr3 (108021942-108021526)
               

               
               1-417, gnl|monDom2|scaffold_0 (7158912-7158202)
               

               
               1-417, gnl|oryCun1|scaffold_208853 (28215-28928)
               

               
               1-417, gnl|panTro1|chr1 (108675836-108676549)
               

               
               1-417, gnl|rheMac2|chr1 (112550122-112550835)
               

               
               1-417, gnl|rn3|chr2 (203732254-203731541)

Expressed library(ies): 6 entry(ies)

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Expressed library(ies): 6 entry(ies)

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               ece (0.229305)
               

               
               col (0.195008)
               

               
               fty (0.17584)
               

               
               ill (0.175593)
               

               
               fbs (0.175346)
               

               
               pla (0.133672)

Expressed library(ies): 6 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ece (0.229305)
               

               
               col (0.195008)
               

               
               fty (0.17584)
               

               
               ill (0.175593)
               

               
               fbs (0.175346)
               

               
               pla (0.133672)

	120-319, - strand, RNAz p=0.960364
	211-329, - strand, RNAz p=0.532291

	1-417, gnl\|bosTau2\|chr3 (25970676-25970260)
	1-417, gnl\|canFam2\|chr6 (45428030-45427317)
	1-417, gnl\|dasNov1\|scaffold_118923 (3781-3099)
	1-417, gnl\|echTel1\|scaffold_277841 (2401-3114)
	1-417, gnl\|hg17\|chr1 (109745587-109746300)
	1-417, gnl\|Hg17\|chr1 (109745975-109746391)
	1-417, gnl\|mm7\|chr3 (108022332-108021619)
	1-417, gnl\|Mm7\|chr3 (108021942-108021526)
	1-417, gnl\|monDom2\|scaffold_0 (7158912-7158202)
	1-417, gnl\|oryCun1\|scaffold_208853 (28215-28928)
	1-417, gnl\|panTro1\|chr1 (108675836-108676549)
	1-417, gnl\|rheMac2\|chr1 (112550122-112550835)
	1-417, gnl\|rn3\|chr2 (203732254-203731541)

	ece (0.229305)
	col (0.195008)
	fty (0.17584)
	ill (0.175593)
	fbs (0.175346)
	pla (0.133672)