Non-Coding RNA Search

Ss1.1-Pig2-121I20.5

Sequence:


               
               AATTCCTTTAATTTCCACTGTTTTGGGGAGTGACATTGAAATACAAGCAAACTCTATGTA
AATAAATCAGTTTTGTTTTTTTTT------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ATCCTTAACCCACTGAACAAGGCCAGGGGTCGAACCTGCAACCTCGTG
GTTCCTAGTCAGATTCATTAACCACAGAGCCACTATGGGAATTCCAATAAATCAGTTCTT
TAGACATCAAAAGTTTCAGGAAGCTTTAGTCATAGGGTTGCAGTCCTTGTGGGCTTGGTT
CATTTCCTTCCTAAAAAAAGATCTCAATTTTTTTTTTTGGTACCACCCCACTCCCTTGCC
CCTGCAGAGTCCTGAGGCTGTGAGTGCAGTTGGGAAACTGAGTTACAACCAGCTGGTAGA
AAAGATCATCACCTGCAAGCACTCCAGTGACACCAACCTCGTGACAAAAGGTGACATCCC
TCCCTTCTCTTATGGGGGTCTTATGTGGAGGGAACGATGGCTATTTAGGTTTAGTGTTTA
TTATCTGTCCCCCTGCCACCATAC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AATTCCTTTAATTTCCACTGTTTTGGGGAGTGACATTGAAATACAAGCAAACTCTATGTA
AATAAATCAGTTTTGTTTTTTTTT------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ATCCTTAACCCACTGAACAAGGCCAGGGGTCGAACCTGCAACCTCGTG
GTTCCTAGTCAGATTCATTAACCACAGAGCCACTATGGGAATTCCAATAAATCAGTTCTT
TAGACATCAAAAGTTTCAGGAAGCTTTAGTCATAGGGTTGCAGTCCTTGTGGGCTTGGTT
CATTTCCTTCCTAAAAAAAGATCTCAATTTTTTTTTTTGGTACCACCCCACTCCCTTGCC
CCTGCAGAGTCCTGAGGCTGTGAGTGCAGTTGGGAAACTGAGTTACAACCAGCTGGTAGA
AAAGATCATCACCTGCAAGCACTCCAGTGACACCAACCTCGTGACAAAAGGTGACATCCC
TCCCTTCTCTTATGGGGGTCTTATGTGGAGGGAACGATGGCTATTTAGGTTTAGTGTTTA
TTATCTGTCCCCCTGCCACCATAC

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               304-407, - strand, RNAz p=0.999946

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               304-407, - strand, RNAz p=0.999946

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               184-513, gnl|bosTau2|chr3 (16557164-16557489)
               

               
               184-513, gnl|Hg17|chr1 (147785797-147785324)
               

               
               184-513, gnl|Mm7|chr3 (95166441-95166748)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               184-513, gnl|bosTau2|chr3 (16557164-16557489)
               

               
               184-513, gnl|Hg17|chr1 (147785797-147785324)
               

               
               184-513, gnl|Mm7|chr3 (95166441-95166748)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               elu (0.385356)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               elu (0.385356)

	184-513, gnl\|bosTau2\|chr3 (16557164-16557489)
	184-513, gnl\|Hg17\|chr1 (147785797-147785324)
	184-513, gnl\|Mm7\|chr3 (95166441-95166748)