Non-Coding RNA Search

Ss1.1-Pig2-121M22.5

Sequence:


               
               GCACCTTCTGCTCTTGCTTTGTCAAAGCTGGTATATCCGGAAGTGGAGGAGTCCAAGTTC
AAGAATAAGGAGGGGGTGAAATTGCCCCGAGGGAAGGAGAAGAATGTTCTAGAAGCTGCC
AGCAATGGAGCCACAGATGCCATAGGCCTTGCTGCTAATGTAGCAGCCAACCTGATTGCC
TTTTTGGCTGTGTTGGCCTTCATCAATGCTGCCCTCTCCTGGCTAGGGGAACTGGTAGAC
ATACAGGGACTCACTTTTCAGGTCATCTGCTCCTATATCCTAAGGCCCGTGGTTTTCATG
ATGGGTGTGGAGTGGGCAGACTGTCCAATGGTGGCTGAGATGGTGGGGATCAAGTTCTTC
ACAAATGAGTTTGTGGCCTATCAGCAACTGTCTCAATACAAGAGCAAACGTCTCTCTGGA
GTGGAAGAGTGGATTGGAGGTGAAAAACAGTGGATTTCAGTGAGAGCTGAAGTCATTACA
ACATTTTCACTCTGTGGATTTGCCAATCTTAGTTCCATAGGCATCACACTTGGAGGCTTG
ACATCAATGGTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCACCTTCTGCTCTTGCTTTGTCAAAGCTGGTATATCCGGAAGTGGAGGAGTCCAAGTTC
AAGAATAAGGAGGGGGTGAAATTGCCCCGAGGGAAGGAGAAGAATGTTCTAGAAGCTGCC
AGCAATGGAGCCACAGATGCCATAGGCCTTGCTGCTAATGTAGCAGCCAACCTGATTGCC
TTTTTGGCTGTGTTGGCCTTCATCAATGCTGCCCTCTCCTGGCTAGGGGAACTGGTAGAC
ATACAGGGACTCACTTTTCAGGTCATCTGCTCCTATATCCTAAGGCCCGTGGTTTTCATG
ATGGGTGTGGAGTGGGCAGACTGTCCAATGGTGGCTGAGATGGTGGGGATCAAGTTCTTC
ACAAATGAGTTTGTGGCCTATCAGCAACTGTCTCAATACAAGAGCAAACGTCTCTCTGGA
GTGGAAGAGTGGATTGGAGGTGAAAAACAGTGGATTTCAGTGAGAGCTGAAGTCATTACA
ACATTTTCACTCTGTGGATTTGCCAATCTTAGTTCCATAGGCATCACACTTGGAGGCTTG
ACATCAATGGTT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61842043|ref|XP_589426.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61842043|ref|XP_589426.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               259-358, + strand, RNAz p=0.684563

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               259-358, + strand, RNAz p=0.684563

Aligned organism(s): 19 entry(ies)

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Aligned organism(s): 19 entry(ies)

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               259-498, gnl|bosTau2|chr10 (44875208-44874970)
               

               
               259-498, gnl|canFam2|chr30 (14639363-14639579)
               

               
               259-498, gnl|danRer3|chrUn (51993774-51993982)
               

               
               259-498, gnl|dasNov1|scaffold_8241 (25122-25343)
               

               
               259-498, gnl|echTel1|scaffold_293803 (46-266)
               

               
               259-498, gnl|fr1|chrUn (200553808-200554016)
               

               
               259-498, gnl|galGal2|chr10 (1774006-1773789)
               

               
               259-498, gnl|hg17|chr15 (43348810-43349033)
               

               
               259-498, gnl|Hg17|chr15 (43348825-43349084)
               

               
               259-498, gnl|loxAfr1|scaffold_6778 (11280-11057)
               

               
               259-498, gnl|mm7|chr2 (122263551-122263773)
               

               
               259-498, gnl|Mm7|chr2 (122263565-122263823)
               

               
               259-498, gnl|monDom2|scaffold_53 (8675668-8675462)
               

               
               259-498, gnl|oryCun1|scaffold_213714 (225026-225249)
               

               
               259-498, gnl|panTro1|chr16 (43295643-43295866)
               

               
               259-498, gnl|rheMac2|chr7 (23624522-23624745)
               

               
               259-498, gnl|rn3|chr3 (109260585-109260363)
               

               
               259-498, gnl|tetNig1|chr13 (2201075-2201296)
               

               
               259-498, gnl|xenTro1|scaffold_62 (1789093-1789311)

Aligned organism(s): 19 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               259-498, gnl|bosTau2|chr10 (44875208-44874970)
               

               
               259-498, gnl|canFam2|chr30 (14639363-14639579)
               

               
               259-498, gnl|danRer3|chrUn (51993774-51993982)
               

               
               259-498, gnl|dasNov1|scaffold_8241 (25122-25343)
               

               
               259-498, gnl|echTel1|scaffold_293803 (46-266)
               

               
               259-498, gnl|fr1|chrUn (200553808-200554016)
               

               
               259-498, gnl|galGal2|chr10 (1774006-1773789)
               

               
               259-498, gnl|hg17|chr15 (43348810-43349033)
               

               
               259-498, gnl|Hg17|chr15 (43348825-43349084)
               

               
               259-498, gnl|loxAfr1|scaffold_6778 (11280-11057)
               

               
               259-498, gnl|mm7|chr2 (122263551-122263773)
               

               
               259-498, gnl|Mm7|chr2 (122263565-122263823)
               

               
               259-498, gnl|monDom2|scaffold_53 (8675668-8675462)
               

               
               259-498, gnl|oryCun1|scaffold_213714 (225026-225249)
               

               
               259-498, gnl|panTro1|chr16 (43295643-43295866)
               

               
               259-498, gnl|rheMac2|chr7 (23624522-23624745)
               

               
               259-498, gnl|rn3|chr3 (109260585-109260363)
               

               
               259-498, gnl|tetNig1|chr13 (2201075-2201296)
               

               
               259-498, gnl|xenTro1|scaffold_62 (1789093-1789311)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               sin (0.524843)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               sin (0.524843)

	259-498, gnl\|bosTau2\|chr10 (44875208-44874970)
	259-498, gnl\|canFam2\|chr30 (14639363-14639579)
	259-498, gnl\|danRer3\|chrUn (51993774-51993982)
	259-498, gnl\|dasNov1\|scaffold_8241 (25122-25343)
	259-498, gnl\|echTel1\|scaffold_293803 (46-266)
	259-498, gnl\|fr1\|chrUn (200553808-200554016)
	259-498, gnl\|galGal2\|chr10 (1774006-1773789)
	259-498, gnl\|hg17\|chr15 (43348810-43349033)
	259-498, gnl\|Hg17\|chr15 (43348825-43349084)
	259-498, gnl\|loxAfr1\|scaffold_6778 (11280-11057)
	259-498, gnl\|mm7\|chr2 (122263551-122263773)
	259-498, gnl\|Mm7\|chr2 (122263565-122263823)
	259-498, gnl\|monDom2\|scaffold_53 (8675668-8675462)
	259-498, gnl\|oryCun1\|scaffold_213714 (225026-225249)
	259-498, gnl\|panTro1\|chr16 (43295643-43295866)
	259-498, gnl\|rheMac2\|chr7 (23624522-23624745)
	259-498, gnl\|rn3\|chr3 (109260585-109260363)
	259-498, gnl\|tetNig1\|chr13 (2201075-2201296)
	259-498, gnl\|xenTro1\|scaffold_62 (1789093-1789311)