Non-Coding RNA Search

Ss1.1-Pig2-121N06.5

Sequence:


               
               GAGGGTCAGCGGCACAGCCCATGCCGACTGGGGTCATGTACATGTATATTCCTGGCGAGC
AGAAGAAAACAGACCCTTTTCCTGTCTTCTTACCTCCCCCTCCTTCATTTTGGCAGCTCA
TACAAGCTTGTATTGAACTGAATAAATGAGTAGATTGTTGTGGACCTCACAAGATTATTT
AATTCTCAAAATGTATAGACCTCGATGGTAGATGTGACCATGTTAGCTTCCCTTCCTTTC
AATTTATTTAAAATATTGTTGTGGAGATACTGTTATCTTATTCTGAGACACAGTCTTGGG
GGAGGGGGAAGTGCATTATAGACCCATGTGCAACTGTACAAATTGTGGTGTGGCTCTGTA
GAAAGCCATGTGCTAAGAATAAACTCTGTTTAAAAAAAACATTAAAGT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAGGGTCAGCGGCACAGCCCATGCCGACTGGGGTCATGTACATGTATATTCCTGGCGAGC
AGAAGAAAACAGACCCTTTTCCTGTCTTCTTACCTCCCCCTCCTTCATTTTGGCAGCTCA
TACAAGCTTGTATTGAACTGAATAAATGAGTAGATTGTTGTGGACCTCACAAGATTATTT
AATTCTCAAAATGTATAGACCTCGATGGTAGATGTGACCATGTTAGCTTCCCTTCCTTTC
AATTTATTTAAAATATTGTTGTGGAGATACTGTTATCTTATTCTGAGACACAGTCTTGGG
GGAGGGGGAAGTGCATTATAGACCCATGTGCAACTGTACAAATTGTGGTGTGGCTCTGTA
GAAAGCCATGTGCTAAGAATAAACTCTGTTTAAAAAAAACATTAAAGT

Aligned organism(s): 14 entry(ies)

More info

Aligned organism(s): 14 entry(ies)

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               40-403, gnl|bosTau2|chr4 (37125479-37125836)
               

               
               40-403, gnl|canFam2|chr14 (43257679-43258384)
               

               
               40-403, gnl|dasNov1|scaffold_4770 (47291-47980)
               

               
               40-403, gnl|echTel1|scaffold_311200 (38264-37584)
               

               
               40-403, gnl|hg17|chr7 (26941256-26941936)
               

               
               40-403, gnl|Hg17|chr7 (26941746-26941377)
               

               
               40-403, gnl|loxAfr1|scaffold_4768 (38906-39577)
               

               
               40-403, gnl|mm7|chr6 (52153012-52153670)
               

               
               40-403, gnl|Mm7|chr6 (52153499-52153146)
               

               
               40-403, gnl|monDom2|scaffold_57 (954327-953576)
               

               
               40-403, gnl|oryCun1|scaffold_200437 (181742-181047)
               

               
               40-403, gnl|panTro1|chr6 (28071366-28072046)
               

               
               40-403, gnl|rheMac2|chr3 (99097570-99096891)
               

               
               40-403, gnl|rn3|chr4 (80766938-80767586)

Aligned organism(s): 14 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               40-403, gnl|bosTau2|chr4 (37125479-37125836)
               

               
               40-403, gnl|canFam2|chr14 (43257679-43258384)
               

               
               40-403, gnl|dasNov1|scaffold_4770 (47291-47980)
               

               
               40-403, gnl|echTel1|scaffold_311200 (38264-37584)
               

               
               40-403, gnl|hg17|chr7 (26941256-26941936)
               

               
               40-403, gnl|Hg17|chr7 (26941746-26941377)
               

               
               40-403, gnl|loxAfr1|scaffold_4768 (38906-39577)
               

               
               40-403, gnl|mm7|chr6 (52153012-52153670)
               

               
               40-403, gnl|Mm7|chr6 (52153499-52153146)
               

               
               40-403, gnl|monDom2|scaffold_57 (954327-953576)
               

               
               40-403, gnl|oryCun1|scaffold_200437 (181742-181047)
               

               
               40-403, gnl|panTro1|chr6 (28071366-28072046)
               

               
               40-403, gnl|rheMac2|chr3 (99097570-99096891)
               

               
               40-403, gnl|rn3|chr4 (80766938-80767586)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

Help | Less info


               
               eje (0.0988338)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               eje (0.0988338)

	40-403, gnl\|bosTau2\|chr4 (37125479-37125836)
	40-403, gnl\|canFam2\|chr14 (43257679-43258384)
	40-403, gnl\|dasNov1\|scaffold_4770 (47291-47980)
	40-403, gnl\|echTel1\|scaffold_311200 (38264-37584)
	40-403, gnl\|hg17\|chr7 (26941256-26941936)
	40-403, gnl\|Hg17\|chr7 (26941746-26941377)
	40-403, gnl\|loxAfr1\|scaffold_4768 (38906-39577)
	40-403, gnl\|mm7\|chr6 (52153012-52153670)
	40-403, gnl\|Mm7\|chr6 (52153499-52153146)
	40-403, gnl\|monDom2\|scaffold_57 (954327-953576)
	40-403, gnl\|oryCun1\|scaffold_200437 (181742-181047)
	40-403, gnl\|panTro1\|chr6 (28071366-28072046)
	40-403, gnl\|rheMac2\|chr3 (99097570-99096891)
	40-403, gnl\|rn3\|chr4 (80766938-80767586)