Ss1.1-Pig2-121N22.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TTTTACTGGAGCATCAATGTGGGCGCTGTGCTGTCGCTGCTGGTAGTGGCCTTTATCCAA CAGAACATCAACTTCCGGTGGGGCGACGGCATCATCGTGGGCTGTGCCGGGCTGGCCTTC TTCATCTTCCTCTTTGCCACTCCCAGCTTCATCACCAAGCCCCCCACAGGCAGCCAAGTG TCCTCCATGCTCAAGCTTGCTCTCCAAAACTGCTGTCCCCGGCTGTGGCACAGACGCTCT GCCAGAGACCCTCCAGATGCCCAGCTGCTGCCTGACCAGAGGTCTCACCAGCCTGGCCCT TCCCCCCAAGAGGACGTGGCCAACTTCCAGGTGCTGGTGAAAATCTTGCCCGTCATGGTG ACCTTGGTGCCCTACTGGATGGTATACTTTCAGATGCAGTCCACGTACGTCCTGCAAGGT CTTCACCTCCAGATCCCCAACATCTTCCCAGACTGCCCTGGCAACAGCTCTGTGGCTCTG AATGCTCAGTGTGGCAGCTACAAGATCCCAGAAGCCTGGCTCCTTCTGGCCAACGTCGTG GTTTTGCTGATTCTAGTGCCTGTGAAGGACCACCTGCTGGACCCTTTACTGCTGCGGTGC AAGCTGCTTCCCTCGACTCTGCAGAAGATGGCACTGGGGATGTTCTTTGGTTTCATGTCT GTCATTGTAGCAGGAGTCCTGGAGATGGAGCGTTTAGAGTACATTGGTCACAACCAGACG GTGTCCCAGAAGATCGGACAGAACAAGTACTATGCAGCACCACTGTCCATCTGGTGGCAG ACCCCTCAGTACCTGCTCATCGGGATCAGTGAGATTTTTGCCAGCATCCCAGGCCTGGAG TTTGCATACTCAGAGGCCCCGCGCTCCATGCAGGGCGCCATGATGGGCATCTTCTTCTGC CTATCCGGGGTGGGCTCACTTTTGGGCTCCGGCCTGGTGGCACTATTGTCACTGCCAGGA GGCTGGCTGCACTGCCCTGAGGATTTCGGGAACATCAACAAATGCCGGCTAGACCTCTAC TTCTTCCTGCTGGCTGGCATTCAGGCTGCCGCGGCCATCCTGTTCATCGGCATCGCTGGG CGCTATGAGAAGGTGACCCAGGGCCCAGCCTCCCAAAGCTGACCCAGGAGGGACAGTGGC TAAACAGCCCCACCTCCGCCCCCTTGCCTCTCCCCACCCCCCAACTCAGACAGCGGCAAT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TTTTACTGGAGCATCAATGTGGGCGCTGTGCTGTCGCTGCTGGTAGTGGCCTTTATCCAA CAGAACATCAACTTCCGGTGGGGCGACGGCATCATCGTGGGCTGTGCCGGGCTGGCCTTC TTCATCTTCCTCTTTGCCACTCCCAGCTTCATCACCAAGCCCCCCACAGGCAGCCAAGTG TCCTCCATGCTCAAGCTTGCTCTCCAAAACTGCTGTCCCCGGCTGTGGCACAGACGCTCT GCCAGAGACCCTCCAGATGCCCAGCTGCTGCCTGACCAGAGGTCTCACCAGCCTGGCCCT TCCCCCCAAGAGGACGTGGCCAACTTCCAGGTGCTGGTGAAAATCTTGCCCGTCATGGTG ACCTTGGTGCCCTACTGGATGGTATACTTTCAGATGCAGTCCACGTACGTCCTGCAAGGT CTTCACCTCCAGATCCCCAACATCTTCCCAGACTGCCCTGGCAACAGCTCTGTGGCTCTG AATGCTCAGTGTGGCAGCTACAAGATCCCAGAAGCCTGGCTCCTTCTGGCCAACGTCGTG GTTTTGCTGATTCTAGTGCCTGTGAAGGACCACCTGCTGGACCCTTTACTGCTGCGGTGC AAGCTGCTTCCCTCGACTCTGCAGAAGATGGCACTGGGGATGTTCTTTGGTTTCATGTCT GTCATTGTAGCAGGAGTCCTGGAGATGGAGCGTTTAGAGTACATTGGTCACAACCAGACG GTGTCCCAGAAGATCGGACAGAACAAGTACTATGCAGCACCACTGTCCATCTGGTGGCAG ACCCCTCAGTACCTGCTCATCGGGATCAGTGAGATTTTTGCCAGCATCCCAGGCCTGGAG TTTGCATACTCAGAGGCCCCGCGCTCCATGCAGGGCGCCATGATGGGCATCTTCTTCTGC CTATCCGGGGTGGGCTCACTTTTGGGCTCCGGCCTGGTGGCACTATTGTCACTGCCAGGA GGCTGGCTGCACTGCCCTGAGGATTTCGGGAACATCAACAAATGCCGGCTAGACCTCTAC TTCTTCCTGCTGGCTGGCATTCAGGCTGCCGCGGCCATCCTGTTCATCGGCATCGCTGGG CGCTATGAGAAGGTGACCCAGGGCCCAGCCTCCCAAAGCTGACCCAGGAGGGACAGTGGC TAAACAGCCCCACCTCCGCCCCCTTGCCTCTCCCCACCCCCCAACTCAGACAGCGGCAAT |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 27 entry(ies) | More info |
| Aligned organism(s): 27 entry(ies) | Help | Less info |
| 1-245, gnl|bosTau2|chr29 (28292561-28292805) | |
| 1-245, gnl|Hg17|chr11 (60470824-60470580) | |
| 1-245, gnl|Mm7|chr19 (10528675-10528913) | |
| 503-674, gnl|bosTau2|chr29 (28299342-28299513) | |
| 503-674, gnl|Hg17|chr11 (60465340-60465169) | |
| 503-674, gnl|Mm7|chr19 (10535032-10535203) | |
| 821-954, gnl|bosTau2|chr17 (25051194-25051327) | |
| 821-954, gnl|canFam2|chr26 (5838043-5837850) | |
| 821-954, gnl|danRer3|chr8 (29585815-29585644) | |
| 821-954, gnl|echTel1|scaffold_175376 (7675-7473) | |
| 821-954, gnl|fr1|chrUn (98677893-98677704) | |
| 821-954, gnl|galGal2|chr15 (3749297-3749122) | |
| 821-954, gnl|hg17|chr12 (127808658-127808855) | |
| 821-954, gnl|Hg17|chr12 (127808852-127808721) | |
| 821-954, gnl|loxAfr1|scaffold_15515 (27286-27478) | |
| 821-954, gnl|mm7|chr5 (126831992-126832165) | |
| 821-954, gnl|Mm7|chr5 (126832167-126832034) | |
| 821-954, gnl|monDom2|scaffold_54 (9374127-9373952) | |
| 821-954, gnl|oryCun1|scaffold_202009 (221-49) | |
| 821-954, gnl|panTro1|chr10 (130938269-130938466) | |
| 821-954, gnl|rheMac2|chr11 (130086966-130087163) | |
| 821-954, gnl|rn3|chr12 (29990464-29990282) | |
| 821-954, gnl|tetNig1|chrUn_random (33626794-33626614) | |
| 821-954, gnl|xenTro1|scaffold_727 (576982-576810) | |
| 988-1198, gnl|bosTau2|chr29 (28303237-28303446) | |
| 988-1198, gnl|Hg17|chr11 (60461422-60461216) | |
| 988-1198, gnl|Mm7|chr19 (10537754-10537948) |
| Aligned organism(s): 27 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-245, gnl|bosTau2|chr29 (28292561-28292805) | |
| 1-245, gnl|Hg17|chr11 (60470824-60470580) | |
| 1-245, gnl|Mm7|chr19 (10528675-10528913) | |
| 503-674, gnl|bosTau2|chr29 (28299342-28299513) | |
| 503-674, gnl|Hg17|chr11 (60465340-60465169) | |
| 503-674, gnl|Mm7|chr19 (10535032-10535203) | |
| 821-954, gnl|bosTau2|chr17 (25051194-25051327) | |
| 821-954, gnl|canFam2|chr26 (5838043-5837850) | |
| 821-954, gnl|danRer3|chr8 (29585815-29585644) | |
| 821-954, gnl|echTel1|scaffold_175376 (7675-7473) | |
| 821-954, gnl|fr1|chrUn (98677893-98677704) | |
| 821-954, gnl|galGal2|chr15 (3749297-3749122) | |
| 821-954, gnl|hg17|chr12 (127808658-127808855) | |
| 821-954, gnl|Hg17|chr12 (127808852-127808721) | |
| 821-954, gnl|loxAfr1|scaffold_15515 (27286-27478) | |
| 821-954, gnl|mm7|chr5 (126831992-126832165) | |
| 821-954, gnl|Mm7|chr5 (126832167-126832034) | |
| 821-954, gnl|monDom2|scaffold_54 (9374127-9373952) | |
| 821-954, gnl|oryCun1|scaffold_202009 (221-49) | |
| 821-954, gnl|panTro1|chr10 (130938269-130938466) | |
| 821-954, gnl|rheMac2|chr11 (130086966-130087163) | |
| 821-954, gnl|rn3|chr12 (29990464-29990282) | |
| 821-954, gnl|tetNig1|chrUn_random (33626794-33626614) | |
| 821-954, gnl|xenTro1|scaffold_727 (576982-576810) | |
| 988-1198, gnl|bosTau2|chr29 (28303237-28303446) | |
| 988-1198, gnl|Hg17|chr11 (60461422-60461216) | |
| 988-1198, gnl|Mm7|chr19 (10537754-10537948) |
| Expressed library(ies): 7 entry(ies) | More info |
| Expressed library(ies): 7 entry(ies) | Help | Less info |
| cly (0.361925) | |
| csp (0.322373) | |
| cga (0.279096) | |
| nco (0.161734) | |
| cli (0.152812) | |
| cag (0.151194) | |
| jca (0.11396) |
| Expressed library(ies): 7 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cly (0.361925) | |
| csp (0.322373) | |
| cga (0.279096) | |
| nco (0.161734) | |
| cli (0.152812) | |
| cag (0.151194) | |
| jca (0.11396) |