Ss1.1-Pig2-121P23.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CAGGCATCGTGTGCATCGCCACCGTGCGCAGCTCGGGCAGGCTGGTGGCTGTCAAGAAGA TGGACCTGCGCAAGCAGCAGAGGCGCGAGCTGCTCTTCAATGAGGTGGTGATCATGCGGG ACTACCAGCACGAGAACGTGGTGGAGATGTACAACAGCTACCTGGTCGGCGACGAGCTCT GGGTGGTGATGGAGTTCCTGGAGGGAGGCGCCCTCACCGACATTGTCACCCACACCAGGA TGAACGAGGAGCAGATCGCCGCCGTGTGCCTGGCCGTGCTGCAGGCCTTGTCCGTCCTCC ACGCCCAGGGCGTCATCCACCGCGACATCAAGAGCGACTCCATCCTGCTGACCCATGATG GCCGGGTGAAGCTGTCGGACTTTGGGTTCTGCGCCCAGGTGAGCAAGGAGGTGCCGCGGA GGAAGTCCCTGGTGGGCACGCCCTACTGGATGGCCCCAGAGCTCATCTCCCGCCTTCCCT ACGGGCCAGAGGTGGACATCTGGTCTCTGGGGGTGATGGTGATCGAGATGGTGGACGGGG AGCCCCCCTACTTCAACGAGCCACCCCTCAAAGCCATGAAGATGATTCGGGACAACCTGC CGCCCCGACTGAAGAATCTGCACAAGGTGTCACCCTCCCTGAAGGGCTTCCTGGACCGCC TGCTGGTGCGTGACCCGGCACAGCGGGCCACGGCGGCTGAGCTGCTCAAGCACCCGTTCC TGGCCAAAGCAGGCCCGCCTGCCAGTATCGTGCCCCTCATGCGCCAGAACCGCACCAGAT GAGGCCCAGCGCCCTGTCCCTGAACCAAAGAGCCCCTTGGGTCACCCCCGCCCTGCCAGA GGCCCGCCGGGGAGCTGCCCCTGCTCCTCCCAGCCCGGGAGACACTCTGCGTGGCACCGC CCTCCTTGCTGCGGGGTGTGCGGGACCCTACTACTGAACTCCAGTTTTGGTTTTGTGACT TTAAACAAACACAGGGACTTGTGGGAGCAAGTGGGGCTCCCAGGAACCCCCGCCTCTGGG ACAGGCCCGCCCTGGTGTTTTCCTGTCTCCAGGAGGACAGGCGGCCCTCCCGTCACTGGA AATCTGCAGTGGGGGCTGCTGGGGGGGAGACAACACTACAGAAGAGGGGTGTGTGTGTGT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CAGGCATCGTGTGCATCGCCACCGTGCGCAGCTCGGGCAGGCTGGTGGCTGTCAAGAAGA TGGACCTGCGCAAGCAGCAGAGGCGCGAGCTGCTCTTCAATGAGGTGGTGATCATGCGGG ACTACCAGCACGAGAACGTGGTGGAGATGTACAACAGCTACCTGGTCGGCGACGAGCTCT GGGTGGTGATGGAGTTCCTGGAGGGAGGCGCCCTCACCGACATTGTCACCCACACCAGGA TGAACGAGGAGCAGATCGCCGCCGTGTGCCTGGCCGTGCTGCAGGCCTTGTCCGTCCTCC ACGCCCAGGGCGTCATCCACCGCGACATCAAGAGCGACTCCATCCTGCTGACCCATGATG GCCGGGTGAAGCTGTCGGACTTTGGGTTCTGCGCCCAGGTGAGCAAGGAGGTGCCGCGGA GGAAGTCCCTGGTGGGCACGCCCTACTGGATGGCCCCAGAGCTCATCTCCCGCCTTCCCT ACGGGCCAGAGGTGGACATCTGGTCTCTGGGGGTGATGGTGATCGAGATGGTGGACGGGG AGCCCCCCTACTTCAACGAGCCACCCCTCAAAGCCATGAAGATGATTCGGGACAACCTGC CGCCCCGACTGAAGAATCTGCACAAGGTGTCACCCTCCCTGAAGGGCTTCCTGGACCGCC TGCTGGTGCGTGACCCGGCACAGCGGGCCACGGCGGCTGAGCTGCTCAAGCACCCGTTCC TGGCCAAAGCAGGCCCGCCTGCCAGTATCGTGCCCCTCATGCGCCAGAACCGCACCAGAT GAGGCCCAGCGCCCTGTCCCTGAACCAAAGAGCCCCTTGGGTCACCCCCGCCCTGCCAGA GGCCCGCCGGGGAGCTGCCCCTGCTCCTCCCAGCCCGGGAGACACTCTGCGTGGCACCGC CCTCCTTGCTGCGGGGTGTGCGGGACCCTACTACTGAACTCCAGTTTTGGTTTTGTGACT TTAAACAAACACAGGGACTTGTGGGAGCAAGTGGGGCTCCCAGGAACCCCCGCCTCTGGG ACAGGCCCGCCCTGGTGTTTTCCTGTCTCCAGGAGGACAGGCGGCCCTCCCGTCACTGGA AATCTGCAGTGGGGGCTGCTGGGGGGGAGACAACACTACAGAAGAGGGGTGTGTGTGTGT |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 156-270, - strand, RNAz p=0.845176 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 156-270, - strand, RNAz p=0.845176 |
| Aligned organism(s): 28 entry(ies) | More info |
| Aligned organism(s): 28 entry(ies) | Help | Less info |
| 93-270, gnl|bosTau2|chr18 (42339077-42338898) | |
| 93-270, gnl|Hg17|chr19 (44357401-44357556) | |
| 93-270, gnl|Mm7|chr7 (25496985-25496811) | |
| 103-239, gnl|bosTau2|chr10 (23662382-23662518) | |
| 103-239, gnl|canFam2|chr30 (10446856-10447010) | |
| 103-239, gnl|danRer3|chr15 (22460343-22460481) | |
| 103-239, gnl|dasNov1|scaffold_2380 (15109-15268) | |
| 103-239, gnl|echTel1|scaffold_310829 (91409-91248) | |
| 103-239, gnl|fr1|chrUn (276728874-276728731) | |
| 103-239, gnl|galGal2|chr5 (2811743-2811594) | |
| 103-239, gnl|hg17|chr15 (38352351-38352507) | |
| 103-239, gnl|Hg17|chr15 (38352357-38352493) | |
| 103-239, gnl|loxAfr1|scaffold_211844 (960-1122) | |
| 103-239, gnl|mm7|chr2 (118434708-118434864) | |
| 103-239, gnl|Mm7|chr2 (118434714-118434850) | |
| 103-239, gnl|monDom2|scaffold_12 (2201757-2201605) | |
| 103-239, gnl|oryCun1|scaffold_198547 (48497-48641) | |
| 103-239, gnl|panTro1|chr16 (38235107-38235263) | |
| 103-239, gnl|rheMac2|chr7 (18606829-18606985) | |
| 103-239, gnl|rn3|chr3 (105085347-105085503) | |
| 103-239, gnl|tetNig1|chr14 (7321724-7321878) | |
| 103-239, gnl|xenTro1|scaffold_271 (17343-17195) | |
| 486-639, gnl|bosTau2|chr18 (42336128-42335975) | |
| 486-639, gnl|Hg17|chr19 (44360149-44360302) | |
| 486-639, gnl|Mm7|chr7 (25494183-25494037) | |
| 490-628, gnl|bosTau2|chr10 (23663675-23663813) | |
| 490-628, gnl|Hg17|chr15 (38353633-38353771) | |
| 490-628, gnl|Mm7|chr2 (118436054-118436192) |
| Aligned organism(s): 28 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 93-270, gnl|bosTau2|chr18 (42339077-42338898) | |
| 93-270, gnl|Hg17|chr19 (44357401-44357556) | |
| 93-270, gnl|Mm7|chr7 (25496985-25496811) | |
| 103-239, gnl|bosTau2|chr10 (23662382-23662518) | |
| 103-239, gnl|canFam2|chr30 (10446856-10447010) | |
| 103-239, gnl|danRer3|chr15 (22460343-22460481) | |
| 103-239, gnl|dasNov1|scaffold_2380 (15109-15268) | |
| 103-239, gnl|echTel1|scaffold_310829 (91409-91248) | |
| 103-239, gnl|fr1|chrUn (276728874-276728731) | |
| 103-239, gnl|galGal2|chr5 (2811743-2811594) | |
| 103-239, gnl|hg17|chr15 (38352351-38352507) | |
| 103-239, gnl|Hg17|chr15 (38352357-38352493) | |
| 103-239, gnl|loxAfr1|scaffold_211844 (960-1122) | |
| 103-239, gnl|mm7|chr2 (118434708-118434864) | |
| 103-239, gnl|Mm7|chr2 (118434714-118434850) | |
| 103-239, gnl|monDom2|scaffold_12 (2201757-2201605) | |
| 103-239, gnl|oryCun1|scaffold_198547 (48497-48641) | |
| 103-239, gnl|panTro1|chr16 (38235107-38235263) | |
| 103-239, gnl|rheMac2|chr7 (18606829-18606985) | |
| 103-239, gnl|rn3|chr3 (105085347-105085503) | |
| 103-239, gnl|tetNig1|chr14 (7321724-7321878) | |
| 103-239, gnl|xenTro1|scaffold_271 (17343-17195) | |
| 486-639, gnl|bosTau2|chr18 (42336128-42335975) | |
| 486-639, gnl|Hg17|chr19 (44360149-44360302) | |
| 486-639, gnl|Mm7|chr7 (25494183-25494037) | |
| 490-628, gnl|bosTau2|chr10 (23663675-23663813) | |
| 490-628, gnl|Hg17|chr15 (38353633-38353771) | |
| 490-628, gnl|Mm7|chr2 (118436054-118436192) |
| Expressed library(ies): 4 entry(ies) | More info |
| Expressed library(ies): 4 entry(ies) | Help | Less info |
| elu (0.385356) | |
| nco (0.161734) | |
| eep (0.122564) | |
| clu (0.119646) |
| Expressed library(ies): 4 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| elu (0.385356) | |
| nco (0.161734) | |
| eep (0.122564) | |
| clu (0.119646) |