Non-Coding RNA Search

Ss1.1-Pig2-122J10.5

Sequence:


               
               GCTCCGCGTCGCTGGGTGGAACTTGGCTCCGCGGCCATGGGCAAGCAGAACAGCAAGCTG
CGGCCAGAGATGCTGCAGGACCTGCGGGAGAACACGGAGTTCTCGGAGCTGGAGCTGCAG
GAGTGGTACAAGGGCTTCCTCAAGGACTGCCCCACAGGCATCCTCAACGTGGACGAGTTC
AAGAAGATCTACGCCAACTTCTTCCCCTACGGCGACGCCTCCAAGTTCGCCGAGCATGTC
TTCCGCACCTTCGACACCAACAGCGACGGCACCATCGACTTCCGGGAGTTCATCATCGCG
CTGAGCGTGACCTCGCGTGGCCGCCTGGAGCAGAAGCTCATGTGGGCCTTCAGCATGTAC
GACCTGGACGGCAACGGCTATATCAGCCGCGAGGAGATGCTGGAGATCGTGCAGGCCATT
TACAAGATGGTTTCTTCCGTGATGAAGATGCCAGAGGACGAGTCGACCCCGGAAAAGAGG
ACGGAGAAAATCTTCCGCCAAATGGATACAAACAACGACGGCAAGCTGTCCCTGGAGGAG
TTCATCCGCGGGGCCAAAAGCGACCCGTCCATCGTGCGTCTGCTGCAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCTCCGCGTCGCTGGGTGGAACTTGGCTCCGCGGCCATGGGCAAGCAGAACAGCAAGCTG
CGGCCAGAGATGCTGCAGGACCTGCGGGAGAACACGGAGTTCTCGGAGCTGGAGCTGCAG
GAGTGGTACAAGGGCTTCCTCAAGGACTGCCCCACAGGCATCCTCAACGTGGACGAGTTC
AAGAAGATCTACGCCAACTTCTTCCCCTACGGCGACGCCTCCAAGTTCGCCGAGCATGTC
TTCCGCACCTTCGACACCAACAGCGACGGCACCATCGACTTCCGGGAGTTCATCATCGCG
CTGAGCGTGACCTCGCGTGGCCGCCTGGAGCAGAAGCTCATGTGGGCCTTCAGCATGTAC
GACCTGGACGGCAACGGCTATATCAGCCGCGAGGAGATGCTGGAGATCGTGCAGGCCATT
TACAAGATGGTTTCTTCCGTGATGAAGATGCCAGAGGACGAGTCGACCCCGGAAAAGAGG
ACGGAGAAAATCTTCCGCCAAATGGATACAAACAACGACGGCAAGCTGTCCCTGGAGGAG
TTCATCCGCGGGGCCAAAAGCGACCCGTCCATCGTGCGTCTGCTGCAG

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

Help | Less info


               
               gi|8850221|ref|NP_058818.1|

Coded protein: 1 entry(ies)

Help | Less info

Protein identifier


               
               gi|8850221|ref|NP_058818.1|

Aligned organism(s): 19 entry(ies)

More info

Aligned organism(s): 19 entry(ies)

Help | Less info


               
               31-415, gnl|bosTau2|chr11 (66633656-66634040)
               

               
               31-415, gnl|canFam2|chr17 (10325810-10326095)
               

               
               31-415, gnl|danRer3|chr20 (34015670-34015955)
               

               
               31-415, gnl|dasNov1|scaffold_41367 (1006-1291)
               

               
               31-415, gnl|echTel1|scaffold_293348 (53086-52800)
               

               
               31-415, gnl|fr1|chrUn (20927361-20927076)
               

               
               31-415, gnl|galGal2|chr3 (95026095-95026380)
               

               
               31-415, gnl|hg17|chr2 (10510577-10510862)
               

               
               31-415, gnl|Hg17|chr2 (10510476-10510860)
               

               
               31-415, gnl|loxAfr1|scaffold_18037 (68768-68483)
               

               
               31-415, gnl|mm7|chr12 (19177870-19177588)
               

               
               31-415, gnl|Mm7|chr12 (17836484-17836868)
               

               
               31-415, gnl|monDom2|scaffold_1 (129082407-129082692)
               

               
               31-415, gnl|oryCun1|scaffold_177563 (6691-6976)
               

               
               31-415, gnl|panTro1|chr12 (11246293-11246578)
               

               
               31-415, gnl|rheMac2|chr13 (10509592-10509877)
               

               
               31-415, gnl|rn3|chr6 (41572924-41573209)
               

               
               31-415, gnl|tetNig1|chr21 (1641443-1641728)
               

               
               31-415, gnl|xenTro1|scaffold_636 (306571-306286)

Aligned organism(s): 19 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               31-415, gnl|bosTau2|chr11 (66633656-66634040)
               

               
               31-415, gnl|canFam2|chr17 (10325810-10326095)
               

               
               31-415, gnl|danRer3|chr20 (34015670-34015955)
               

               
               31-415, gnl|dasNov1|scaffold_41367 (1006-1291)
               

               
               31-415, gnl|echTel1|scaffold_293348 (53086-52800)
               

               
               31-415, gnl|fr1|chrUn (20927361-20927076)
               

               
               31-415, gnl|galGal2|chr3 (95026095-95026380)
               

               
               31-415, gnl|hg17|chr2 (10510577-10510862)
               

               
               31-415, gnl|Hg17|chr2 (10510476-10510860)
               

               
               31-415, gnl|loxAfr1|scaffold_18037 (68768-68483)
               

               
               31-415, gnl|mm7|chr12 (19177870-19177588)
               

               
               31-415, gnl|Mm7|chr12 (17836484-17836868)
               

               
               31-415, gnl|monDom2|scaffold_1 (129082407-129082692)
               

               
               31-415, gnl|oryCun1|scaffold_177563 (6691-6976)
               

               
               31-415, gnl|panTro1|chr12 (11246293-11246578)
               

               
               31-415, gnl|rheMac2|chr13 (10509592-10509877)
               

               
               31-415, gnl|rn3|chr6 (41572924-41573209)
               

               
               31-415, gnl|tetNig1|chr21 (1641443-1641728)
               

               
               31-415, gnl|xenTro1|scaffold_636 (306571-306286)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

Help | Less info


               
               ecc (0.115035)

Expressed library(ies): 1 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ecc (0.115035)

	31-415, gnl\|bosTau2\|chr11 (66633656-66634040)
	31-415, gnl\|canFam2\|chr17 (10325810-10326095)
	31-415, gnl\|danRer3\|chr20 (34015670-34015955)
	31-415, gnl\|dasNov1\|scaffold_41367 (1006-1291)
	31-415, gnl\|echTel1\|scaffold_293348 (53086-52800)
	31-415, gnl\|fr1\|chrUn (20927361-20927076)
	31-415, gnl\|galGal2\|chr3 (95026095-95026380)
	31-415, gnl\|hg17\|chr2 (10510577-10510862)
	31-415, gnl\|Hg17\|chr2 (10510476-10510860)
	31-415, gnl\|loxAfr1\|scaffold_18037 (68768-68483)
	31-415, gnl\|mm7\|chr12 (19177870-19177588)
	31-415, gnl\|Mm7\|chr12 (17836484-17836868)
	31-415, gnl\|monDom2\|scaffold_1 (129082407-129082692)
	31-415, gnl\|oryCun1\|scaffold_177563 (6691-6976)
	31-415, gnl\|panTro1\|chr12 (11246293-11246578)
	31-415, gnl\|rheMac2\|chr13 (10509592-10509877)
	31-415, gnl\|rn3\|chr6 (41572924-41573209)
	31-415, gnl\|tetNig1\|chr21 (1641443-1641728)
	31-415, gnl\|xenTro1\|scaffold_636 (306571-306286)