Non-Coding RNA Search

Ss1.1-Pig2-122K11.5

Sequence:


               
               GACCTAACCTTTGGAAGCATGGTGGTCTCTAGACCCTCTGCAGAAAAAGCTGGAGGTGGC
TGTGGCTCCACCCAGAACCTGCCCCTTCCCCCAGCCCAGTTAGGAAGTAAGCCCCTGGTG
TCTACTGGGACGGGCCAGCTCCGTGCTTTGGAGTAGGGCAGGCGGCTGAGGCCTGCCTGG
ACTGGTCATTCCAGGGGCCTGGCCCCCGCATTGCTTGGGGCAGGGAGTCCCAGGAGTGCT
GCCACTGGCCCCCACTCCCCTATCCTGAGGCAGGGAATTGCACAATTTCTGAGTGCCTCC
CTTCCCGGAGGGAGTGCATGGGCTGCAGTGTACTGCAGAGGGGGATCTCTCACCCATGCC
ATTCCCCCAAAGCAGGTTGGGAGAAAGGGTAACTGGCTGGACCAGACTAGCTTCCCAGAT
GTCTGAGAAGTAGTGCCAATAAAAAAATCAGCTGCC------------AAAAAAAAAAAA
AAAAAGGGGGGG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GACCTAACCTTTGGAAGCATGGTGGTCTCTAGACCCTCTGCAGAAAAAGCTGGAGGTGGC
TGTGGCTCCACCCAGAACCTGCCCCTTCCCCCAGCCCAGTTAGGAAGTAAGCCCCTGGTG
TCTACTGGGACGGGCCAGCTCCGTGCTTTGGAGTAGGGCAGGCGGCTGAGGCCTGCCTGG
ACTGGTCATTCCAGGGGCCTGGCCCCCGCATTGCTTGGGGCAGGGAGTCCCAGGAGTGCT
GCCACTGGCCCCCACTCCCCTATCCTGAGGCAGGGAATTGCACAATTTCTGAGTGCCTCC
CTTCCCGGAGGGAGTGCATGGGCTGCAGTGTACTGCAGAGGGGGATCTCTCACCCATGCC
ATTCCCCCAAAGCAGGTTGGGAGAAAGGGTAACTGGCTGGACCAGACTAGCTTCCCAGAT
GTCTGAGAAGTAGTGCCAATAAAAAAATCAGCTGCC------------AAAAAAAAAAAA
AAAAAGGGGGGG

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

Help | Less info


               
               106-446, - strand, RNAz p=0.999902

Predicted RNA structure(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               106-446, - strand, RNAz p=0.999902

Aligned organism(s): 2 entry(ies)

More info

Aligned organism(s): 2 entry(ies)

Help | Less info


               
               7-446, gnl|bosTau2|chr19 (15814428-15814013)
               

               
               7-446, gnl|Hg17|chr17 (24093405-24094589)

Aligned organism(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               7-446, gnl|bosTau2|chr19 (15814428-15814013)
               

               
               7-446, gnl|Hg17|chr17 (24093405-24094589)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

Help | Less info


               
               eru (0.120048)

Expressed library(ies): 1 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               eru (0.120048)

	7-446, gnl\|bosTau2\|chr19 (15814428-15814013)
	7-446, gnl\|Hg17\|chr17 (24093405-24094589)