Non-Coding RNA Search

Ss1.1-Pig2-123C24.5

Sequence:


               
               TGGGGAGAGGGGCCTTCCTCGCCTGGGACACGGGCTTCTCGGACGAGCGGCACGGCGACG
TGGTGGTGGTGCGGCCCATGCGTGAGCACACGCTGAAGGAGGTCGCCTTCTACAACCGCC
TGTTCGCCGTCCCCTCCGTCTTCACGCCGGCCATCGACACCAAGGCCCCTGAAAAGGCCA
GCGTCCACCGGCTGATGGAGGCCTTCCTGCTCAGGCTGCAGGCGCGGTTCCCCTCCACCG
TCAGCACCGTGTACAGGACCAGCGAGAAGCTGCTCAAGGCCCCCAGGGACGGCTTCGCGG
CCGGCCCCCCGGGGCCCCGCTGCCTGCTCTGTATGTGCGCTCTGGACGTGGACACGGCTG
ACAGTGCCACAGCTTTTGGGGCACAGACCACCTCACACGTCTCTCCAACACAGCCCCCCG
TCCCAGAGGCCGGGGCGGCTGGCGGGCCCTGCTGCTGTGCACAGATGGGCGGGGCCCAGG
GCTGCTGCAGGGAAGCCGCCCGGGCCTGCGTCATCGAGCAGCTGTGCTACGGCTGCCGAG
TGAACCTCAAGGACATGCCTTCCCTGGACCCTCTGCCGCCCTACATCCTGGCCGAGGCCC
AGCTCCGCAGCCAGAGGCCCAGCGCGGAGCAGGAGGCCTGGGCGTCTCTGCTGGGGAGCG
ATGAGGAGGCCCAGGTGGGCGAGAGCTGAGCCCCCAGGAAGGCAAGAACCGGCAGTGGGC
AGGGTCTCCCGTGTGTATAAATAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGGGGAGAGGGGCCTTCCTCGCCTGGGACACGGGCTTCTCGGACGAGCGGCACGGCGACG
TGGTGGTGGTGCGGCCCATGCGTGAGCACACGCTGAAGGAGGTCGCCTTCTACAACCGCC
TGTTCGCCGTCCCCTCCGTCTTCACGCCGGCCATCGACACCAAGGCCCCTGAAAAGGCCA
GCGTCCACCGGCTGATGGAGGCCTTCCTGCTCAGGCTGCAGGCGCGGTTCCCCTCCACCG
TCAGCACCGTGTACAGGACCAGCGAGAAGCTGCTCAAGGCCCCCAGGGACGGCTTCGCGG
CCGGCCCCCCGGGGCCCCGCTGCCTGCTCTGTATGTGCGCTCTGGACGTGGACACGGCTG
ACAGTGCCACAGCTTTTGGGGCACAGACCACCTCACACGTCTCTCCAACACAGCCCCCCG
TCCCAGAGGCCGGGGCGGCTGGCGGGCCCTGCTGCTGTGCACAGATGGGCGGGGCCCAGG
GCTGCTGCAGGGAAGCCGCCCGGGCCTGCGTCATCGAGCAGCTGTGCTACGGCTGCCGAG
TGAACCTCAAGGACATGCCTTCCCTGGACCCTCTGCCGCCCTACATCCTGGCCGAGGCCC
AGCTCCGCAGCCAGAGGCCCAGCGCGGAGCAGGAGGCCTGGGCGTCTCTGCTGGGGAGCG
ATGAGGAGGCCCAGGTGGGCGAGAGCTGAGCCCCCAGGAAGGCAAGAACCGGCAGTGGGC
AGGGTCTCCCGTGTGTATAAATAA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

Help | Less info


               
               gi|26355583|dbj|BAC41181.1|

Coded protein: 1 entry(ies)

Help | Less info

Protein identifier


               
               gi|26355583|dbj|BAC41181.1|

Aligned organism(s): 6 entry(ies)

More info

Aligned organism(s): 6 entry(ies)

Help | Less info


               
               32-165, gnl|bosTau2|chr18 (12645865-12645732)
               

               
               32-165, gnl|Hg17|chr16 (87307555-87307688)
               

               
               32-165, gnl|Mm7|chr8 (121121594-121121727)
               


               
               357-489, gnl|bosTau2|chr18 (12645104-12644975)
               

               
               357-489, gnl|Hg17|chr16 (87308492-87308642)
               

               
               357-489, gnl|Mm7|chr8 (121123087-121123225)

Aligned organism(s): 6 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               32-165, gnl|bosTau2|chr18 (12645865-12645732)
               

               
               32-165, gnl|Hg17|chr16 (87307555-87307688)
               

               
               32-165, gnl|Mm7|chr8 (121121594-121121727)
               


               
               357-489, gnl|bosTau2|chr18 (12645104-12644975)
               

               
               357-489, gnl|Hg17|chr16 (87308492-87308642)
               

               
               357-489, gnl|Mm7|chr8 (121123087-121123225)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

Help | Less info


               
               duo (0.172801)

Expressed library(ies): 1 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               duo (0.172801)

	32-165, gnl\|bosTau2\|chr18 (12645865-12645732)
	32-165, gnl\|Hg17\|chr16 (87307555-87307688)
	32-165, gnl\|Mm7\|chr8 (121121594-121121727)

	357-489, gnl\|bosTau2\|chr18 (12645104-12644975)
	357-489, gnl\|Hg17\|chr16 (87308492-87308642)
	357-489, gnl\|Mm7\|chr8 (121123087-121123225)