Non-Coding RNA Search

Ss1.1-Pig2-123F23.5

Sequence:


               
               ACAATAAGAAGTCAGGGTAGATGGTTCCAGAATCACAGTGGCTAAGCTCCATCACAAAGG
ACCCAACCTCCTTCTCCCTTTCCCTCTATCCTCCTCAGCAGGTTTTATTCTGGTGCTGCT
CATCTCATTGACCAATTTCTTACCTGCAAACTTTAATGTTACATAGTAAATGGTAATATG
TCCTGTGTAAATTAGTGCATCTATTAAATATAAAAAGTGCAACTTAGGGAATCCCTGGAA
AAAGAATTATGAGGTTTTATATAAAATGCTCAGGATCAGGTGCCTTCCCTTCCACCTTAA
TTTATGTGGAGGATAATGTTTCTGTACGTAAGAGATAGTTGAGGATTGTTACGTAAGTAT
AAAGATTCATTTTATTTGGTACTTAAAATAGCTACCTGCTTTTTCCCTTCTCTGACTATT
CTTTTAGAATGGGATATTACTGTTATAGTTAAGAGATTGACTTAAACTATGATTGTCCTT
AAATCATTTGAGATGGAATTACAGTTTTCCTTAAATTTCTTTCCATTTGTATAGATAAAA
CATTAGTGGGACGTAGTGAGGGATAAATTTTTCCATCTTATTTTTTATTTTTTTAATTTT
TTTAATTTTTTAGTTTTTTTGTCTTTTTGCTATTTCTTGGGCTGCTCCCACAGCATATGG
AGGTTCCCAGGCTATGGGTCCAATCGTAGCTGTAGCCACGGGCCTGCACCAGAGCCACAG
CAACGTGGGATCCAAGCCGGGTCTGCAACCTACACCACAGCTCACGGCAACGCCGGATCA
TCAACCCACTGAGCAAGGGCAGGGACCGAACCTGCAACCTCATGGTTCCTAGTTGGATTC
ATTAACCACTACGCCATGACGGGAACTCCCCATCTTATTTTTCATTGATGCTCTCCTGGA
AATGAGTAGTCTTTCTATACCTTTATTGTGTGACGTCAAAAGAGAAACTGAAGGAAGACA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ACAATAAGAAGTCAGGGTAGATGGTTCCAGAATCACAGTGGCTAAGCTCCATCACAAAGG
ACCCAACCTCCTTCTCCCTTTCCCTCTATCCTCCTCAGCAGGTTTTATTCTGGTGCTGCT
CATCTCATTGACCAATTTCTTACCTGCAAACTTTAATGTTACATAGTAAATGGTAATATG
TCCTGTGTAAATTAGTGCATCTATTAAATATAAAAAGTGCAACTTAGGGAATCCCTGGAA
AAAGAATTATGAGGTTTTATATAAAATGCTCAGGATCAGGTGCCTTCCCTTCCACCTTAA
TTTATGTGGAGGATAATGTTTCTGTACGTAAGAGATAGTTGAGGATTGTTACGTAAGTAT
AAAGATTCATTTTATTTGGTACTTAAAATAGCTACCTGCTTTTTCCCTTCTCTGACTATT
CTTTTAGAATGGGATATTACTGTTATAGTTAAGAGATTGACTTAAACTATGATTGTCCTT
AAATCATTTGAGATGGAATTACAGTTTTCCTTAAATTTCTTTCCATTTGTATAGATAAAA
CATTAGTGGGACGTAGTGAGGGATAAATTTTTCCATCTTATTTTTTATTTTTTTAATTTT
TTTAATTTTTTAGTTTTTTTGTCTTTTTGCTATTTCTTGGGCTGCTCCCACAGCATATGG
AGGTTCCCAGGCTATGGGTCCAATCGTAGCTGTAGCCACGGGCCTGCACCAGAGCCACAG
CAACGTGGGATCCAAGCCGGGTCTGCAACCTACACCACAGCTCACGGCAACGCCGGATCA
TCAACCCACTGAGCAAGGGCAGGGACCGAACCTGCAACCTCATGGTTCCTAGTTGGATTC
ATTAACCACTACGCCATGACGGGAACTCCCCATCTTATTTTTCATTGATGCTCTCCTGGA
AATGAGTAGTCTTTCTATACCTTTATTGTGTGACGTCAAAAGAGAAACTGAAGGAAGACA

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               18-316, gnl|bosTau2|chr6 (48666426-48666740)
               

               
               18-316, gnl|Hg17|chr4 (72260377-72260644)
               

               
               18-316, gnl|Mm7|chr5 (88721553-88721937)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               18-316, gnl|bosTau2|chr6 (48666426-48666740)
               

               
               18-316, gnl|Hg17|chr4 (72260377-72260644)
               

               
               18-316, gnl|Mm7|chr5 (88721553-88721937)

Expressed library(ies): 3 entry(ies)

More info

Expressed library(ies): 3 entry(ies)

Help | Less info


               
               med (0.232504)
               

               
               mcp (0.170648)
               

               
               eye (0.170503)

Expressed library(ies): 3 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               med (0.232504)
               

               
               mcp (0.170648)
               

               
               eye (0.170503)

	18-316, gnl\|bosTau2\|chr6 (48666426-48666740)
	18-316, gnl\|Hg17\|chr4 (72260377-72260644)
	18-316, gnl\|Mm7\|chr5 (88721553-88721937)