Non-Coding RNA Search

Ss1.1-Pig2-123K17.5

Sequence:


               
               AGGACAGGGAAGAGCGGGCGCTATGGGGAGCCGGACGCCAGGGTCCCCTCTCCAGGCTGT
GCAGCTGCGCTGGGGCCCCCGGCGCCGATCGCGTCTGCTGCCGCTGCTGCCGCCGCCTCT
GCTGCTGCTGCTGCTGCTGCCGCCGCCACTCAGGGTCGGGGGCTTCAACTTAGACGCGGA
GGCCCCAGCAGTGCTCTCTGGGCCCCCGGGCTCCTTCTTCGGCTTCTCGGTGGAGTTTTA
CCGGCCGGGGACAGACGGGGTCAGCGTGCTGGTGGGAGCACCCAAGGCTAACACTAGCCA
GCCGGGAGTGCTGCAGGGCGGTGCGGTCTACCTCTGTCCCTGGGCCACCAGCCCAGCACC
ATGCACCCCCATTGAGTTCGACAGCAAAGGCTCTCGGATCCTGGAGTCCTCGCCATCCAG
CCTAGAGGGAGATGAGCCCGTGGAATACAAGTCCTTGCAGTGGTTTGGAGCGACGGTTAG
AGCCCATGGCTCCTCCATCTTGGCCTGTGCTCCCCTCTACAGTTGGCGCACCGAGAAGGA
GCCGCTGAATGATCCCGTGGGCACCTGCTACCTCTCCACAGACAACTTCACCCGGATTCT
GGAATATGCACCCTGCCGCTCAGATTTCAGCTCGGCGGCAGGACAGGGCTACTGCCAAGG
GGGCTTCAGTGCCGAGTTCACCAAGACCGGGCGTGTGGTCCTGGGTGGACCAGGAAGCTA
TTTCTGGCAAGGCCAGATCCTGTCGGCCACCCAGGAGCAGATTTCAGAATCCTATTATCC
CGAGTACCTGATCAACCCGGTTCAGGGGCAGCTGCAGACTCGCCAGGCTAGTTCCATTTA
CGATGACAGCTACCTGGGATACTCTGTGGCTGTGGGTGAATTCAGTGGCGATGACACAGA
AGACTTCGTTGCTGGCGTGCCCAAAGGGAACCTCACCTACGGTTATGTCACCATCCTTAA
TGGCTCAGACATCCGGTCCCTCTACAACTTCTCAGGGGAACAGATGGCCTCCTATTTTGG
CTATGCAGTGGCTGCCACAGACATCAATGGGGACGGGCTGGATGACTTGCTGGTGGGGGC
GCCCCTGCTCATGGAGCGGACAGC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGGACAGGGAAGAGCGGGCGCTATGGGGAGCCGGACGCCAGGGTCCCCTCTCCAGGCTGT
GCAGCTGCGCTGGGGCCCCCGGCGCCGATCGCGTCTGCTGCCGCTGCTGCCGCCGCCTCT
GCTGCTGCTGCTGCTGCTGCCGCCGCCACTCAGGGTCGGGGGCTTCAACTTAGACGCGGA
GGCCCCAGCAGTGCTCTCTGGGCCCCCGGGCTCCTTCTTCGGCTTCTCGGTGGAGTTTTA
CCGGCCGGGGACAGACGGGGTCAGCGTGCTGGTGGGAGCACCCAAGGCTAACACTAGCCA
GCCGGGAGTGCTGCAGGGCGGTGCGGTCTACCTCTGTCCCTGGGCCACCAGCCCAGCACC
ATGCACCCCCATTGAGTTCGACAGCAAAGGCTCTCGGATCCTGGAGTCCTCGCCATCCAG
CCTAGAGGGAGATGAGCCCGTGGAATACAAGTCCTTGCAGTGGTTTGGAGCGACGGTTAG
AGCCCATGGCTCCTCCATCTTGGCCTGTGCTCCCCTCTACAGTTGGCGCACCGAGAAGGA
GCCGCTGAATGATCCCGTGGGCACCTGCTACCTCTCCACAGACAACTTCACCCGGATTCT
GGAATATGCACCCTGCCGCTCAGATTTCAGCTCGGCGGCAGGACAGGGCTACTGCCAAGG
GGGCTTCAGTGCCGAGTTCACCAAGACCGGGCGTGTGGTCCTGGGTGGACCAGGAAGCTA
TTTCTGGCAAGGCCAGATCCTGTCGGCCACCCAGGAGCAGATTTCAGAATCCTATTATCC
CGAGTACCTGATCAACCCGGTTCAGGGGCAGCTGCAGACTCGCCAGGCTAGTTCCATTTA
CGATGACAGCTACCTGGGATACTCTGTGGCTGTGGGTGAATTCAGTGGCGATGACACAGA
AGACTTCGTTGCTGGCGTGCCCAAAGGGAACCTCACCTACGGTTATGTCACCATCCTTAA
TGGCTCAGACATCCGGTCCCTCTACAACTTCTCAGGGGAACAGATGGCCTCCTATTTTGG
CTATGCAGTGGCTGCCACAGACATCAATGGGGACGGGCTGGATGACTTGCTGGTGGGGGC
GCCCCTGCTCATGGAGCGGACAGC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q5EE52_MACMU

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q5EE52_MACMU

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               1-259, gnl|bosTau2|chr5 (16383828-16384080)
               

               
               1-259, gnl|Hg17|chr12 (53099271-53099031)
               

               
               1-259, gnl|Mm7|chr15 (103355366-103355117)
               


               
               730-858, gnl|bosTau2|chr5 (16392780-16392908)
               

               
               730-858, gnl|Hg17|chr12 (53088288-53088160)
               

               
               730-858, gnl|Mm7|chr15 (103345261-103345133)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-259, gnl|bosTau2|chr5 (16383828-16384080)
               

               
               1-259, gnl|Hg17|chr12 (53099271-53099031)
               

               
               1-259, gnl|Mm7|chr15 (103355366-103355117)
               


               
               730-858, gnl|bosTau2|chr5 (16392780-16392908)
               

               
               730-858, gnl|Hg17|chr12 (53088288-53088160)
               

               
               730-858, gnl|Mm7|chr15 (103345261-103345133)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               pla (0.133672)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pla (0.133672)

	1-259, gnl\|bosTau2\|chr5 (16383828-16384080)
	1-259, gnl\|Hg17\|chr12 (53099271-53099031)
	1-259, gnl\|Mm7\|chr15 (103355366-103355117)

	730-858, gnl\|bosTau2\|chr5 (16392780-16392908)
	730-858, gnl\|Hg17\|chr12 (53088288-53088160)
	730-858, gnl\|Mm7\|chr15 (103345261-103345133)