Ss1.1-Pig2-124J16.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GGGCACCTGGCTGGAGTTTAAGACCAAGGCCTTCTCCAAAAGTGAGCCTGGATCGTCCTG GGAGCTGCTCCAGGCCTGCGGGCGGGTGAAGCGGCAGCTCTGTGCCATCTACCGTCTCAG CTTCCTGACCACGGCTCCAGGCCGGGGAGGCCCCCACCTGCCCGAGGACCTTCAGGACCA GGTCCAGACGCTCATGCAAGAAAAGCTGGCGGACTGGAGGGACTTCTTGTTGGTGAAGAG CAAGAGAAACGTCACCATGGTGTCCTACCTGGAAGACTTCCCGGGCTTGGTGCATTTCAT CTACGTGGACCGCACCACTGGCCAGATGGTGGCCCCCTCCCTCAGCACCAGTGAAAGGAC TTCTTCGGAGCTGGGCAGGGGGCCCCTGGCCACCTTCGTCAAAACCAAGGTCTGGTCCCT GATCCGGCTGGCACGCAGGTACCTGCAAAAGGGCTACACCACGCTGCTGTTCCGCGAGGG GGACTTCTACTGCTCCTACTTCCTGTGGTTCGAGAACGAGATGGGCCACAAACTCCAGAT CATCGAGGTGCCTGTCCTGTCTGACGACTCAGCTCCCGTCGGCATGCTGGGAGGAGACTA CTACAGAAAGCTCCTGCGGTACTACAGCAAGGGCCACCCCGCCGAGGCCGTCAGGTGCCA CGAACTGCTGGCCCTCCACCTGTCAGTCATCCCCACGGACGTGCTGGT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GGGCACCTGGCTGGAGTTTAAGACCAAGGCCTTCTCCAAAAGTGAGCCTGGATCGTCCTG GGAGCTGCTCCAGGCCTGCGGGCGGGTGAAGCGGCAGCTCTGTGCCATCTACCGTCTCAG CTTCCTGACCACGGCTCCAGGCCGGGGAGGCCCCCACCTGCCCGAGGACCTTCAGGACCA GGTCCAGACGCTCATGCAAGAAAAGCTGGCGGACTGGAGGGACTTCTTGTTGGTGAAGAG CAAGAGAAACGTCACCATGGTGTCCTACCTGGAAGACTTCCCGGGCTTGGTGCATTTCAT CTACGTGGACCGCACCACTGGCCAGATGGTGGCCCCCTCCCTCAGCACCAGTGAAAGGAC TTCTTCGGAGCTGGGCAGGGGGCCCCTGGCCACCTTCGTCAAAACCAAGGTCTGGTCCCT GATCCGGCTGGCACGCAGGTACCTGCAAAAGGGCTACACCACGCTGCTGTTCCGCGAGGG GGACTTCTACTGCTCCTACTTCCTGTGGTTCGAGAACGAGATGGGCCACAAACTCCAGAT CATCGAGGTGCCTGTCCTGTCTGACGACTCAGCTCCCGTCGGCATGCTGGGAGGAGACTA CTACAGAAAGCTCCTGCGGTACTACAGCAAGGGCCACCCCGCCGAGGCCGTCAGGTGCCA CGAACTGCTGGCCCTCCACCTGTCAGTCATCCCCACGGACGTGCTGGT |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 294-411, - strand, RNAz p=0.687364 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 294-411, - strand, RNAz p=0.687364 |
| Aligned organism(s): 36 entry(ies) | More info |
| Aligned organism(s): 36 entry(ies) | Help | Less info |
| 64-198, gnl|bosTau2|chr26 (9901609-9901743) | |
| 64-198, gnl|canFam2|chr28 (14550918-14551067) | |
| 64-198, gnl|dasNov1|scaffold_54246 (13187-13040) | |
| 64-198, gnl|echTel1|scaffold_261668 (2586-2739) | |
| 64-198, gnl|fr1|chrUn (118012970-118013128) | |
| 64-198, gnl|hg17|chr10 (100173492-100173640) | |
| 64-198, gnl|Hg17|chr10 (100173634-100173500) | |
| 64-198, gnl|loxAfr1|scaffold_18023 (55003-54855) | |
| 64-198, gnl|mm7|chr19 (42654375-42654523) | |
| 64-198, gnl|Mm7|chr19 (42654517-42654383) | |
| 64-198, gnl|monDom2|scaffold_14 (23785405-23785257) | |
| 64-198, gnl|oryCun1|scaffold_172482 (46269-46121) | |
| 64-198, gnl|panTro1|chr8 (101911380-101911528) | |
| 64-198, gnl|rheMac2|chr9 (98014262-98014410) | |
| 64-198, gnl|rn3|chr1 (248243328-248243180) | |
| 264-411, gnl|bosTau2|chr26 (9902883-9903030) | |
| 264-411, gnl|Hg17|chr10 (100172261-100172114) | |
| 264-411, gnl|Mm7|chr19 (42653724-42653577) | |
| 604-708, gnl|bosTau2|chr26 (9907144-9907248) | |
| 604-708, gnl|canFam2|chr28 (14545132-14545307) | |
| 604-708, gnl|danRer3|chr13 (41993279-41993119) | |
| 604-708, gnl|dasNov1|scaffold_19469 (89649-89479) | |
| 604-708, gnl|echTel1|scaffold_303107 (4402-4572) | |
| 604-708, gnl|fr1|chrUn (118011864-118012034) | |
| 604-708, gnl|galGal2|chrUn (68859839-68859669) | |
| 604-708, gnl|hg17|chr10 (100167306-100167476) | |
| 604-708, gnl|Hg17|chr10 (100167476-100167372) | |
| 604-708, gnl|loxAfr1|scaffold_29586 (18998-19152) | |
| 604-708, gnl|mm7|chr19 (42649499-42649672) | |
| 604-708, gnl|Mm7|chr19 (42649672-42649568) | |
| 604-708, gnl|monDom2|scaffold_14 (23793433-23793268) | |
| 604-708, gnl|oryCun1|scaffold_172482 (50896-50721) | |
| 604-708, gnl|panTro1|chr8 (101905014-101905184) | |
| 604-708, gnl|rn3|chr1 (248248589-248248422) | |
| 604-708, gnl|tetNig1|chr17 (5124714-5124878) | |
| 604-708, gnl|xenTro1|scaffold_51 (2585185-2585349) |
| Aligned organism(s): 36 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 64-198, gnl|bosTau2|chr26 (9901609-9901743) | |
| 64-198, gnl|canFam2|chr28 (14550918-14551067) | |
| 64-198, gnl|dasNov1|scaffold_54246 (13187-13040) | |
| 64-198, gnl|echTel1|scaffold_261668 (2586-2739) | |
| 64-198, gnl|fr1|chrUn (118012970-118013128) | |
| 64-198, gnl|hg17|chr10 (100173492-100173640) | |
| 64-198, gnl|Hg17|chr10 (100173634-100173500) | |
| 64-198, gnl|loxAfr1|scaffold_18023 (55003-54855) | |
| 64-198, gnl|mm7|chr19 (42654375-42654523) | |
| 64-198, gnl|Mm7|chr19 (42654517-42654383) | |
| 64-198, gnl|monDom2|scaffold_14 (23785405-23785257) | |
| 64-198, gnl|oryCun1|scaffold_172482 (46269-46121) | |
| 64-198, gnl|panTro1|chr8 (101911380-101911528) | |
| 64-198, gnl|rheMac2|chr9 (98014262-98014410) | |
| 64-198, gnl|rn3|chr1 (248243328-248243180) | |
| 264-411, gnl|bosTau2|chr26 (9902883-9903030) | |
| 264-411, gnl|Hg17|chr10 (100172261-100172114) | |
| 264-411, gnl|Mm7|chr19 (42653724-42653577) | |
| 604-708, gnl|bosTau2|chr26 (9907144-9907248) | |
| 604-708, gnl|canFam2|chr28 (14545132-14545307) | |
| 604-708, gnl|danRer3|chr13 (41993279-41993119) | |
| 604-708, gnl|dasNov1|scaffold_19469 (89649-89479) | |
| 604-708, gnl|echTel1|scaffold_303107 (4402-4572) | |
| 604-708, gnl|fr1|chrUn (118011864-118012034) | |
| 604-708, gnl|galGal2|chrUn (68859839-68859669) | |
| 604-708, gnl|hg17|chr10 (100167306-100167476) | |
| 604-708, gnl|Hg17|chr10 (100167476-100167372) | |
| 604-708, gnl|loxAfr1|scaffold_29586 (18998-19152) | |
| 604-708, gnl|mm7|chr19 (42649499-42649672) | |
| 604-708, gnl|Mm7|chr19 (42649672-42649568) | |
| 604-708, gnl|monDom2|scaffold_14 (23793433-23793268) | |
| 604-708, gnl|oryCun1|scaffold_172482 (50896-50721) | |
| 604-708, gnl|panTro1|chr8 (101905014-101905184) | |
| 604-708, gnl|rn3|chr1 (248248589-248248422) | |
| 604-708, gnl|tetNig1|chr17 (5124714-5124878) | |
| 604-708, gnl|xenTro1|scaffold_51 (2585185-2585349) |
| Expressed library(ies): 3 entry(ies) | More info |
| Expressed library(ies): 3 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| ese (0.126502) | |
| ebs (0.118301) | |
| cty (0.10408) |