Ss1.1-Pig2-124K23.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AAAGGGGACACAGGCAGGGGCCCGGCAGGACCCGGTGATGACAGGCTGGAAAGGGGACAC AGGCAGGGGCCCGGCAGGACCCGGTGATGACAGGCTGTCAGGCTCGCTGCAAGTGACCAG GCCCGCGGAACGAGGCATGGCGCAGGCAGATGGGGCCCCCTGCCCCGGCACCGCCCCGAG CCAGCCCTGCGTCTTCAAGCTGGTTCTCCTGGGCAGTGGCTCTGTGGGCAAGTCCAGCTT GGCTTTCCGGTATGTGAAGAATGACTTCAAGAGCATCCTGCCGACGGTGGGATGTGCCTT CTTCACCAAGGTGGTGGATTTGGGGGCTGCGTCTCTGAAGCTGGAGATCTGGGACACGGC CGGCCAGGAGAAGTACCACAGCGTCTGCCACCTCTACTTCAGGGGCGCCAATGCTGCGCT TGTGGTGTATGACGTCACCAGGAAGGATTCCTTCCTCAAGGCGCAGCAGTGGCTCAAGGA CCTGGAAGAGGAGTTCCGCCTGGGTGACGTGGTGGTGATGCTGGTTGGCAACAAGCTGGA CCTTGGCAAGGAGCGGGAGGTGGCCTTTGAGGAGGGGAAGGAGTTTGCCGAGAGCAAGGG GCTGCTATTCATGGAAACCTCGGCCAAGCTGAACCACCAGGTGACTGAGGCCTTCGGCGC CATTGCCCAGGAGCTTTGGCGCAGAGAAGAGAGGAAGGAGGACCAGCAGCAGCAGCAGAG AGACGCACAGCTGGATCTGAACCAGAGGCCCTCGGCGCAGGCCAGATGCTGCGCCCGCTA GAAGCAGCCTCTCCAGGAGGGGCCGTGGGGAGGAGGCCCCCAGCCCGGGCCCTGCCCGCT CCGTGTTGACCAGATACTTATCCCGATTCGCCGTCGATGCTGGCTTGTTCCTGAGTCCCG GTGGCTCTGGAAGCTGGCATCCCCCTGAATTACCTCCTCCCAGAGCTGGCGGGAATCCTT CAAGCCAAGGGCCCATATCCAGTG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AAAGGGGACACAGGCAGGGGCCCGGCAGGACCCGGTGATGACAGGCTGGAAAGGGGACAC AGGCAGGGGCCCGGCAGGACCCGGTGATGACAGGCTGTCAGGCTCGCTGCAAGTGACCAG GCCCGCGGAACGAGGCATGGCGCAGGCAGATGGGGCCCCCTGCCCCGGCACCGCCCCGAG CCAGCCCTGCGTCTTCAAGCTGGTTCTCCTGGGCAGTGGCTCTGTGGGCAAGTCCAGCTT GGCTTTCCGGTATGTGAAGAATGACTTCAAGAGCATCCTGCCGACGGTGGGATGTGCCTT CTTCACCAAGGTGGTGGATTTGGGGGCTGCGTCTCTGAAGCTGGAGATCTGGGACACGGC CGGCCAGGAGAAGTACCACAGCGTCTGCCACCTCTACTTCAGGGGCGCCAATGCTGCGCT TGTGGTGTATGACGTCACCAGGAAGGATTCCTTCCTCAAGGCGCAGCAGTGGCTCAAGGA CCTGGAAGAGGAGTTCCGCCTGGGTGACGTGGTGGTGATGCTGGTTGGCAACAAGCTGGA CCTTGGCAAGGAGCGGGAGGTGGCCTTTGAGGAGGGGAAGGAGTTTGCCGAGAGCAAGGG GCTGCTATTCATGGAAACCTCGGCCAAGCTGAACCACCAGGTGACTGAGGCCTTCGGCGC CATTGCCCAGGAGCTTTGGCGCAGAGAAGAGAGGAAGGAGGACCAGCAGCAGCAGCAGAG AGACGCACAGCTGGATCTGAACCAGAGGCCCTCGGCGCAGGCCAGATGCTGCGCCCGCTA GAAGCAGCCTCTCCAGGAGGGGCCGTGGGGAGGAGGCCCCCAGCCCGGGCCCTGCCCGCT CCGTGTTGACCAGATACTTATCCCGATTCGCCGTCGATGCTGGCTTGTTCCTGAGTCCCG GTGGCTCTGGAAGCTGGCATCCCCCTGAATTACCTCCTCCCAGAGCTGGCGGGAATCCTT CAAGCCAAGGGCCCATATCCAGTG |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 444-563, + strand, RNAz p=0.899594 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 444-563, + strand, RNAz p=0.899594 |
| Homologous human UTR: 1 entry(ies) | More info |
| Homologous human UTR: 1 entry(ies) | Help | Less info |
Human gene identifier and UTR site,
human gene reading direction
human gene reading direction
| 3' of BC050426, + |
| Aligned organism(s): 23 entry(ies) | More info |
| Aligned organism(s): 23 entry(ies) | Help | Less info |
| 134-295, gnl|bosTau2|chr3 (82623765-82623604) | |
| 134-295, gnl|Hg17|chr2 (238276800-238276639) | |
| 134-295, gnl|Mm7|chr1 (90868315-90868154) | |
| 444-583, gnl|bosTau2|chr3 (84093985-84093846) | |
| 444-583, gnl|canFam2|chr25 (51213947-51214038) | |
| 444-583, gnl|danRer3|chr19 (23728884-23728802) | |
| 444-583, gnl|dasNov1|scaffold_148179 (4353-4272) | |
| 444-583, gnl|echTel1|scaffold_114623 (219-125) | |
| 444-583, gnl|fr1|chrUn (24517369-24517465) | |
| 444-583, gnl|hg17|chr2 (238267884-238267983) | |
| 444-583, gnl|Hg17|chr2 (238268027-238267886) | |
| 444-583, gnl|loxAfr1|scaffold_91647 (4425-4524) | |
| 444-583, gnl|mm7|chr1 (90864007-90864097) | |
| 444-583, gnl|Mm7|chr1 (90864141-90864001) | |
| 444-583, gnl|monDom2|scaffold_184 (1142360-1142250) | |
| 444-583, gnl|oryCun1|scaffold_180156 (3889-3979) | |
| 444-583, gnl|panTro1|chr13 (129207733-129207829) | |
| 444-583, gnl|rheMac2|chr12 (101426395-101426494) | |
| 444-583, gnl|rn3|chr9 (90366168-90366258) | |
| 444-583, gnl|tetNig1|chr2 (18528185-18528096) | |
| 665-834, gnl|bosTau2|chr3 (84065557-84065390) | |
| 665-834, gnl|Hg17|chr2 (238265772-238265614) | |
| 665-834, gnl|Mm7|chr1 (90863012-90862843) |
| Aligned organism(s): 23 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 134-295, gnl|bosTau2|chr3 (82623765-82623604) | |
| 134-295, gnl|Hg17|chr2 (238276800-238276639) | |
| 134-295, gnl|Mm7|chr1 (90868315-90868154) | |
| 444-583, gnl|bosTau2|chr3 (84093985-84093846) | |
| 444-583, gnl|canFam2|chr25 (51213947-51214038) | |
| 444-583, gnl|danRer3|chr19 (23728884-23728802) | |
| 444-583, gnl|dasNov1|scaffold_148179 (4353-4272) | |
| 444-583, gnl|echTel1|scaffold_114623 (219-125) | |
| 444-583, gnl|fr1|chrUn (24517369-24517465) | |
| 444-583, gnl|hg17|chr2 (238267884-238267983) | |
| 444-583, gnl|Hg17|chr2 (238268027-238267886) | |
| 444-583, gnl|loxAfr1|scaffold_91647 (4425-4524) | |
| 444-583, gnl|mm7|chr1 (90864007-90864097) | |
| 444-583, gnl|Mm7|chr1 (90864141-90864001) | |
| 444-583, gnl|monDom2|scaffold_184 (1142360-1142250) | |
| 444-583, gnl|oryCun1|scaffold_180156 (3889-3979) | |
| 444-583, gnl|panTro1|chr13 (129207733-129207829) | |
| 444-583, gnl|rheMac2|chr12 (101426395-101426494) | |
| 444-583, gnl|rn3|chr9 (90366168-90366258) | |
| 444-583, gnl|tetNig1|chr2 (18528185-18528096) | |
| 665-834, gnl|bosTau2|chr3 (84065557-84065390) | |
| 665-834, gnl|Hg17|chr2 (238265772-238265614) | |
| 665-834, gnl|Mm7|chr1 (90863012-90862843) |
| Expressed library(ies): 3 entry(ies) | More info |
| Expressed library(ies): 3 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| nje (0.16592) | |
| jej (0.0989218) | |
| eje (0.0988338) |