Non-Coding RNA Search

Ss1.1-Pig2-124P21.5.5

Sequence:


               
               ACACTGCCACACTACCAGAAAGACACCAGGACCTTCAGGTTCCTCATGCTCAATCCTGGG
GAGATCTTTTCCATTCACCCTCCCACTTTCCTATTGTTGACCCTGTGTCCCCAGCATCAA
GCAGTCTTCATGTACCCCTGAGGTCAGCTTGGAATTCAGGTCCTGTTTCAGGATTTCGAG
CCCCTGGTCCTCGAAGAGTAGATATGCCCCCAGATGATGACTGGAGGCAAAACAGTTATG
CTCTGCAATCTGGGCACAGGAGGACGGGGAGAGAGGAGTTTCTGTTTGTTGTAGCAGATT
CTCCTGGAAGAGAGCAGATCAGGGCTAGAGCTCTGCAGCACAGCAGGTGGTAAGGGTCAT
CCCTGTCCTCTTCTGGAGCCACTGCTTTCTCTGGGCTGTGGTAGAGTTGGTACGCTGCAT
CCCTGACAGGGTTGTGCTAGTCTCATCTCAGTAGAGTTGGCAGTTTCTCCTGGGGGAGCC
AGGAACCCCTAAAGGACCTGGCTTTTTGAAAAATATTTGAAATTCCAATTTCCATTCACC
TAGCAAAAGGAAGCAGCTGCTGTTTAGGGCTTTATTTGACCCACTTTAAAGATGAATCCA
TATTACTCTGGAAACTAGCTATTGTTTAGGATCTTAGGGTCACCATTTTAGTTCTGGATA
TCTATGCCTCCACCTGCACCTAAGCCCTCATCCTCTGTTCCTTACTATATTACCAACATC
TGTTTTGTGTTTTATCCGCCCATCCCTGTTACCTGATCTTGTGATTTCCTCACCCCCCCA
TCCTTGGAGGAACGTGTAGCTATGTGGTCTTGGTCCTGACCACATCATTCAGGCTAGCCC
ATCTGCCCAGACTACCAGCCTTCCCTCTGCTCCCAAACCTTAGGCCTAGAATGCGGAGCT
GCCAACACAGTATTTGCTCTTCTGAACAGATGGAGTCAGGCACACTAACATACCCTCCTG
TCGTCTGCAGCAGAGCCATTACTGCCACTTGCTCAGTCGCCATTGTAAACCCTCAGAGTC
AGCTGAACTATTTTAGGGTCAAACATACTGTTTTTGTAAAGTATTTTTCATTAATAAATC
TATGAGATAGTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ACACTGCCACACTACCAGAAAGACACCAGGACCTTCAGGTTCCTCATGCTCAATCCTGGG
GAGATCTTTTCCATTCACCCTCCCACTTTCCTATTGTTGACCCTGTGTCCCCAGCATCAA
GCAGTCTTCATGTACCCCTGAGGTCAGCTTGGAATTCAGGTCCTGTTTCAGGATTTCGAG
CCCCTGGTCCTCGAAGAGTAGATATGCCCCCAGATGATGACTGGAGGCAAAACAGTTATG
CTCTGCAATCTGGGCACAGGAGGACGGGGAGAGAGGAGTTTCTGTTTGTTGTAGCAGATT
CTCCTGGAAGAGAGCAGATCAGGGCTAGAGCTCTGCAGCACAGCAGGTGGTAAGGGTCAT
CCCTGTCCTCTTCTGGAGCCACTGCTTTCTCTGGGCTGTGGTAGAGTTGGTACGCTGCAT
CCCTGACAGGGTTGTGCTAGTCTCATCTCAGTAGAGTTGGCAGTTTCTCCTGGGGGAGCC
AGGAACCCCTAAAGGACCTGGCTTTTTGAAAAATATTTGAAATTCCAATTTCCATTCACC
TAGCAAAAGGAAGCAGCTGCTGTTTAGGGCTTTATTTGACCCACTTTAAAGATGAATCCA
TATTACTCTGGAAACTAGCTATTGTTTAGGATCTTAGGGTCACCATTTTAGTTCTGGATA
TCTATGCCTCCACCTGCACCTAAGCCCTCATCCTCTGTTCCTTACTATATTACCAACATC
TGTTTTGTGTTTTATCCGCCCATCCCTGTTACCTGATCTTGTGATTTCCTCACCCCCCCA
TCCTTGGAGGAACGTGTAGCTATGTGGTCTTGGTCCTGACCACATCATTCAGGCTAGCCC
ATCTGCCCAGACTACCAGCCTTCCCTCTGCTCCCAAACCTTAGGCCTAGAATGCGGAGCT
GCCAACACAGTATTTGCTCTTCTGAACAGATGGAGTCAGGCACACTAACATACCCTCCTG
TCGTCTGCAGCAGAGCCATTACTGCCACTTGCTCAGTCGCCATTGTAAACCCTCAGAGTC
AGCTGAACTATTTTAGGGTCAAACATACTGTTTTTGTAAAGTATTTTTCATTAATAAATC
TATGAGATAGTT

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               121-394, + strand, RNAz p=0.998098
               

               
               766-912, - strand, RNAz p=0.818731

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               121-394, + strand, RNAz p=0.998098
               

               
               766-912, - strand, RNAz p=0.818731

Similar Transcript(s): 6 entry(ies)

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Similar Transcript(s): 6 entry(ies)

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               121-393, BovGen_12936 normal cattle brain Bos taurus cDNA clone 
(gb|CO884611.1|), blast E-value=0, identity=91.21% 
               

               
               121-393, 1156786 MARC 7BOV Bos taurus cDNA 5', mRNA sequence (gb|DN277532.1|), 
blast E-value=0, identity=91.58% 
               

               
               121-393, 1437704 MARC 7BOV Bos taurus cDNA 5', mRNA sequence (gb|DT884513.1|), 
blast E-value=0, identity=91.21% 
               

               
               121-393, LB02829.CR_K14 GC_BGC-28 Bos taurus cDNA clone IMAGE (gb|DV914188.1|), 
blast E-value=0, identity=91.21% 
               

               
               121-393, 1590431 MARC 11BOV Bos taurus cDNA 5', mRNA sequence (gb|DY459239.1|), 
blast E-value=0, identity=91.21% 
               

               
               121-393, LB01938.CR_H21 GC_BGC-19 Bos taurus cDNA clone IMAGE (gb|EE230064.1|), 
blast E-value=0, identity=91.21%

Similar Transcript(s): 6 entry(ies)

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PigEST conread start position and end position of sequence similarity to another annotated EST (NCBI dbEST),
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript


               
               121-393, BovGen_12936 normal cattle brain Bos taurus cDNA clone 
(gb|CO884611.1|), blast E-value=0, identity=91.21% 
               

               
               121-393, 1156786 MARC 7BOV Bos taurus cDNA 5', mRNA sequence (gb|DN277532.1|), 
blast E-value=0, identity=91.58% 
               

               
               121-393, 1437704 MARC 7BOV Bos taurus cDNA 5', mRNA sequence (gb|DT884513.1|), 
blast E-value=0, identity=91.21% 
               

               
               121-393, LB02829.CR_K14 GC_BGC-28 Bos taurus cDNA clone IMAGE (gb|DV914188.1|), 
blast E-value=0, identity=91.21% 
               

               
               121-393, 1590431 MARC 11BOV Bos taurus cDNA 5', mRNA sequence (gb|DY459239.1|), 
blast E-value=0, identity=91.21% 
               

               
               121-393, LB01938.CR_H21 GC_BGC-19 Bos taurus cDNA clone IMAGE (gb|EE230064.1|), 
blast E-value=0, identity=91.21%

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of AK127213, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of AK127213, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-1092, gnl|bosTau2|chr28 (22723860-22722775)
               

               
               1-1092, gnl|Hg17|chr10 (74928745-74927310)
               

               
               1-1092, gnl|Mm7|chr14 (18206810-18205477)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1092, gnl|bosTau2|chr28 (22723860-22722775)
               

               
               1-1092, gnl|Hg17|chr10 (74928745-74927310)
               

               
               1-1092, gnl|Mm7|chr14 (18206810-18205477)

Expressed library(ies): 4 entry(ies)

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Expressed library(ies): 4 entry(ies)

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               fbs (0.350693)
               

               
               nlu (0.191681)
               

               
               fty (0.17584)
               

               
               hyp (0.142837)

Expressed library(ies): 4 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fbs (0.350693)
               

               
               nlu (0.191681)
               

               
               fty (0.17584)
               

               
               hyp (0.142837)

	121-394, + strand, RNAz p=0.998098
	766-912, - strand, RNAz p=0.818731

	121-393, BovGen_12936 normal cattle brain Bos taurus cDNA clone (gb\|CO884611.1\|), blast E-value=0, identity=91.21%
	121-393, 1156786 MARC 7BOV Bos taurus cDNA 5', mRNA sequence (gb\|DN277532.1\|), blast E-value=0, identity=91.58%
	121-393, 1437704 MARC 7BOV Bos taurus cDNA 5', mRNA sequence (gb\|DT884513.1\|), blast E-value=0, identity=91.21%
	121-393, LB02829.CR_K14 GC_BGC-28 Bos taurus cDNA clone IMAGE (gb\|DV914188.1\|), blast E-value=0, identity=91.21%
	121-393, 1590431 MARC 11BOV Bos taurus cDNA 5', mRNA sequence (gb\|DY459239.1\|), blast E-value=0, identity=91.21%
	121-393, LB01938.CR_H21 GC_BGC-19 Bos taurus cDNA clone IMAGE (gb\|EE230064.1\|), blast E-value=0, identity=91.21%

	1-1092, gnl\|bosTau2\|chr28 (22723860-22722775)
	1-1092, gnl\|Hg17\|chr10 (74928745-74927310)
	1-1092, gnl\|Mm7\|chr14 (18206810-18205477)