Non-Coding RNA Search

Ss1.1-Pig2-126A05.5

Sequence:


               
               TCCAACAAACTCCGTGTCTGGTGGGGTACAGATGCCGCCCACGCGTCCGCAAAGCCACCG
CCTGCCTCTTTTGACAGAATCAAGAGTGAGAAGATTTTTGGTGGGGGGCCTCTCAAGGCA
AACGCAGAGAACAGAAAGGCAATGGGGCCTGGTCCTCGGGAGCTGGTGGATCATTTGCAA
GGGATGCCCTTTGTCCTTGATTTGCCCTTCTGGAAATTACCCCGAGAGCCTGGGAAAGGG
CTCAGTCAGCCTCTGGAGCCTTCTTCCATCCCCTCCCAACTCAACATCAAACAGGCCTTT
TATGGGAAGCTTTCCAAACTCCAGCTCAGTTCCACCAGCTTTAATTATTCCTCCAGCTCC
CCCACCTTTCCCAAAGGCCTTGCTGGAAGTGTGGTGCAGCTGAGCCACAAAGCAAACTTT
GGTGCGAGCCACAGTGCATCACTTTCCTTGCAGATGTTCACCGACAGCAGCACGGTGGAA
AGCATCTCGCTCCAGTGTGCGTGCAGCCTGAAAGCCATGATCATGTGCCAGGGCTGCGGC
GCGTTCTGTCACGATGACTGTATT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TCCAACAAACTCCGTGTCTGGTGGGGTACAGATGCCGCCCACGCGTCCGCAAAGCCACCG
CCTGCCTCTTTTGACAGAATCAAGAGTGAGAAGATTTTTGGTGGGGGGCCTCTCAAGGCA
AACGCAGAGAACAGAAAGGCAATGGGGCCTGGTCCTCGGGAGCTGGTGGATCATTTGCAA
GGGATGCCCTTTGTCCTTGATTTGCCCTTCTGGAAATTACCCCGAGAGCCTGGGAAAGGG
CTCAGTCAGCCTCTGGAGCCTTCTTCCATCCCCTCCCAACTCAACATCAAACAGGCCTTT
TATGGGAAGCTTTCCAAACTCCAGCTCAGTTCCACCAGCTTTAATTATTCCTCCAGCTCC
CCCACCTTTCCCAAAGGCCTTGCTGGAAGTGTGGTGCAGCTGAGCCACAAAGCAAACTTT
GGTGCGAGCCACAGTGCATCACTTTCCTTGCAGATGTTCACCGACAGCAGCACGGTGGAA
AGCATCTCGCTCCAGTGTGCGTGCAGCCTGAAAGCCATGATCATGTGCCAGGGCTGCGGC
GCGTTCTGTCACGATGACTGTATT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|23270893|gb|AAH33284.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|23270893|gb|AAH33284.1|

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               42-441, - strand, RNAz p=0.917214
               

               
               447-564, + strand, RNAz p=0.605264

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               42-441, - strand, RNAz p=0.917214
               

               
               447-564, + strand, RNAz p=0.605264

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               7-564, gnl|bosTau2|chr13 (42758808-42758247)
               

               
               7-564, gnl|Hg17|chr20 (30488202-30488760)
               

               
               7-564, gnl|Mm7|chr2 (153142327-153142888)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               7-564, gnl|bosTau2|chr13 (42758808-42758247)
               

               
               7-564, gnl|Hg17|chr20 (30488202-30488760)
               

               
               7-564, gnl|Mm7|chr2 (153142327-153142888)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               col (0.195008)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               col (0.195008)

	42-441, - strand, RNAz p=0.917214
	447-564, + strand, RNAz p=0.605264

	7-564, gnl\|bosTau2\|chr13 (42758808-42758247)
	7-564, gnl\|Hg17\|chr20 (30488202-30488760)
	7-564, gnl\|Mm7\|chr2 (153142327-153142888)