Non-Coding RNA Search

Ss1.1-Pig2-126B07.5

Sequence:


               
               TGACAGCTTTGTTATAGCTGAGGCCAGGGCCGCCCCCTTCCTTTTGGTCTCACTCATCTT
GCTCCTGGTTGCCCAACTTCACTGGGAGGGCAAGCTCCTACCACCTAAGCTAGTCACAGT
ACCCCGTTTTGGCTTTTTGACCCCAACAGGCCCCCCACGGCACAATGGCTTGCATACCCT
GGGGCTTGGAGGTGGGTTGCTTTTATGTATAAGGCTAGCTGGGCTTTTTCACCGCTGCCC
TGAAGAGACACCTGCTTGTAGCTCCTCACCCTGGCTGAGTCCCCTGGCGTCCATGGTGGG
TGGTCGAGCCAAGAATTTGTGGTATGGAGCTTGTGTGGGGGCGCTGGTGGCCCTGTTAGC
CGCTGTGCGCCTGTGGCTTCGCCGCTATGGTAATCTCAAGAGCCCTGAGCCCCCTGTGCT
CTTTGTGCGCTGGGGGCTGCCCCTAATGGTACTCGGCACTGCTGCCTACTGGGCACTGGC
ATCGGGGGCAGATGAAGCACCCCCACGTCTCCGGGCCCTGGTTGCTGGGGCATCAGTTAT
GTTGCCTAGGGCTGTGGCAGGGTTGGCGGCTTCAGGGCTCATGCTGCTGCTCTGGAGGCC
TGTGACGGTGCTGGTGAAAGCTTCGACGGGCGCTCCAAGGACCAGGACTATCCTCACTCC
CTTCTCAGGCCCCCCCACATCTCAGGCTGACCTGGATTACGTGGTTCCTCAAATCTACCG
ACATATGCAGGAGGAGTTCCGGGGCCGACTAGAGAGAACCAAATCTCAGGGCCCCCTGAC
AGTGGCTGCCTATCAGTTGGGGAGTGTCTACTCAGCGGCTGTGGTCACGGCCCTCACCTT
CTTGGCCTTCCCACTTCTGCTATTGCATGCAGAGCGCATTAGCCTTGTGTTCCTGCTTCT
GTTTCTGCAGAGTTCCTTCTCCTGCATCTGCTTGCTGCTGGGATACCCATCACCACCCCT
GGTCCTTTTACTGTGCCATGGCATGCAGTCTCTGCTTGTCCTCCATGGCCACTCCCACCT
TCTATTCCACTTGGCCACCTGCCTGTCTTTCCAGCCATCCATTGGCAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGACAGCTTTGTTATAGCTGAGGCCAGGGCCGCCCCCTTCCTTTTGGTCTCACTCATCTT
GCTCCTGGTTGCCCAACTTCACTGGGAGGGCAAGCTCCTACCACCTAAGCTAGTCACAGT
ACCCCGTTTTGGCTTTTTGACCCCAACAGGCCCCCCACGGCACAATGGCTTGCATACCCT
GGGGCTTGGAGGTGGGTTGCTTTTATGTATAAGGCTAGCTGGGCTTTTTCACCGCTGCCC
TGAAGAGACACCTGCTTGTAGCTCCTCACCCTGGCTGAGTCCCCTGGCGTCCATGGTGGG
TGGTCGAGCCAAGAATTTGTGGTATGGAGCTTGTGTGGGGGCGCTGGTGGCCCTGTTAGC
CGCTGTGCGCCTGTGGCTTCGCCGCTATGGTAATCTCAAGAGCCCTGAGCCCCCTGTGCT
CTTTGTGCGCTGGGGGCTGCCCCTAATGGTACTCGGCACTGCTGCCTACTGGGCACTGGC
ATCGGGGGCAGATGAAGCACCCCCACGTCTCCGGGCCCTGGTTGCTGGGGCATCAGTTAT
GTTGCCTAGGGCTGTGGCAGGGTTGGCGGCTTCAGGGCTCATGCTGCTGCTCTGGAGGCC
TGTGACGGTGCTGGTGAAAGCTTCGACGGGCGCTCCAAGGACCAGGACTATCCTCACTCC
CTTCTCAGGCCCCCCCACATCTCAGGCTGACCTGGATTACGTGGTTCCTCAAATCTACCG
ACATATGCAGGAGGAGTTCCGGGGCCGACTAGAGAGAACCAAATCTCAGGGCCCCCTGAC
AGTGGCTGCCTATCAGTTGGGGAGTGTCTACTCAGCGGCTGTGGTCACGGCCCTCACCTT
CTTGGCCTTCCCACTTCTGCTATTGCATGCAGAGCGCATTAGCCTTGTGTTCCTGCTTCT
GTTTCTGCAGAGTTCCTTCTCCTGCATCTGCTTGCTGCTGGGATACCCATCACCACCCCT
GGTCCTTTTACTGTGCCATGGCATGCAGTCTCTGCTTGTCCTCCATGGCCACTCCCACCT
TCTATTCCACTTGGCCACCTGCCTGTCTTTCCAGCCATCCATTGGCAT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|20152314|dbj|BAB89338.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|20152314|dbj|BAB89338.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               801-963, - strand, RNAz p=0.898426

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               801-963, - strand, RNAz p=0.898426

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-963, gnl|bosTau2|chr8 (27877262-27876299)
               

               
               1-963, gnl|Hg17|chr9 (35082198-35081235)
               

               
               1-963, gnl|Mm7|chr4 (43035042-43034079)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-963, gnl|bosTau2|chr8 (27877262-27876299)
               

               
               1-963, gnl|Hg17|chr9 (35082198-35081235)
               

               
               1-963, gnl|Mm7|chr4 (43035042-43034079)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               pla (0.133672)
               

               
               nmm (0.132802)
               

               
               jca (0.11396)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pla (0.133672)
               

               
               nmm (0.132802)
               

               
               jca (0.11396)

	1-963, gnl\|bosTau2\|chr8 (27877262-27876299)
	1-963, gnl\|Hg17\|chr9 (35082198-35081235)
	1-963, gnl\|Mm7\|chr4 (43035042-43034079)