Non-Coding RNA Search

Ss1.1-Pig2-126B22.5

Sequence:


               
               AAAATCAAACGTCTTTATGTGTCTAAATAGCCCTTTTTTTTCTGGCCCTAAAAGGGAGGA
TGACAAAGAGCATTCCAGATCAGGCCCTTCAGAGCTTCTCAAGATCTTATAATATTAATG
GGCCTTCTAAACACTAACAAGACGAGGCTCTTTCCAACCCTTAGGCTCCTCTGAGCCACA
TCCCAGCACTCGGGTACAGATGAGTGGCAGCTGTAAACGGGAGATAAGGAAGAGGCGAGA
CAGATGGGCAGAAGGAAGGATGGTGATGTGGCGATGGAGGGAGTGGTGGAGCCGGACAGG
AAGCCCCACACACAGGGCAGCATCCACTGCTGGAAACCTCCCGGGCATGGACCACCACCG
GCACCCCTGCCACTGCGGAGCCTACAGCTCCTGACAGCACTGAGCAGGGAGCCTTGTTAG
GAGCAGATCAGTTGCGCTGGAATGAAGCCCTTAGCCATCGAGGTAACCAGCCAAAGGGAT
TCCAGCTGTTTCCAGACCCTCCCCCAATAGGGCATTGCATCTGCCCTACCCCATGTTCCT
GGGCATCTCTTCTGCACTCAGCCCACAGCTTCAGACCCACGATGCCTGAGGGAGAAACTG
GGTAAGGGGTGGCCTTCTGTAGCCGCCCAGTTGAGTGGTTGGCCTTCATCTCCTATGACC
TCATTCTCCCCATAGGCAAGATGGGTAAATAACATTTATAAGACATTTCTCTGCATTTTA
GAGAACTGTGGGCCCTTGTGGCAGTGGCAGCTGAGGCCTGAGTGGAGAACAGGCCTGAGT
AGAGTGCATCCAGGGGCATCCCCAGTACCTGGCTACCCTGCAGGGTCAGTCTGGAAAACC
AGTTGGCCATGCTACTGACTGTGCAGCCCAATGGGACTTGTGTCTTTGATGACATTCTGG
TATTCCCACTGGTTTTCCACCTGAATAGTGCTACCTTCACACCCGCTGGAACACACCCTT
CCTGAAATCCACTCACCCTGTGCCTTTGGCACTCTGTGCTCTCCCATCTCCTAACATTCC
GCCACCCTTCCCCCACTTAGAGGGCTTCTTTTCTTCCCAGCAAGTAATCCTAGCCATCCT
CCCCACCCCCACACCCTGGGGGGATGGCCACTGACTTTCCCTGTACTGGGCCTCACAGGG
GACACCTGAATGGCTTCTGTTAGGACTTTGCCCACCTTCTCTCAGAGAGTGCATGGTAGC
CTAGTGTGGCCTGTCTCACTTTCCTAGGAGATGTGACCCACTAACATGTGGCAGCTCTAA
CCCAAAGGCCCCCTCAGATGCATTACAGTAAATCTGGAGCCAGAGAGAGAGGTCCCCTCC
ATTCACAGCCCACTGGATTAGACATTCCGTGTAGGGCTTACTTAGAATGAAAGATACTTG
AATTACTGAGCGCTGCGAGCGCCCAGCTTCTGTTACAGTGTTAGCCATTGTCTACACAGG
TGGCCATTGTCACGAAATGAGAGTGATGCCTGAAGATCTCGATGATGCTTGAGCCTTTTA
TGTAACTTTTATTAAGTCTTTGTGTATCTCAACTCATTAATAAAGAAAAGAAGAGGAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAAATCAAACGTCTTTATGTGTCTAAATAGCCCTTTTTTTTCTGGCCCTAAAAGGGAGGA
TGACAAAGAGCATTCCAGATCAGGCCCTTCAGAGCTTCTCAAGATCTTATAATATTAATG
GGCCTTCTAAACACTAACAAGACGAGGCTCTTTCCAACCCTTAGGCTCCTCTGAGCCACA
TCCCAGCACTCGGGTACAGATGAGTGGCAGCTGTAAACGGGAGATAAGGAAGAGGCGAGA
CAGATGGGCAGAAGGAAGGATGGTGATGTGGCGATGGAGGGAGTGGTGGAGCCGGACAGG
AAGCCCCACACACAGGGCAGCATCCACTGCTGGAAACCTCCCGGGCATGGACCACCACCG
GCACCCCTGCCACTGCGGAGCCTACAGCTCCTGACAGCACTGAGCAGGGAGCCTTGTTAG
GAGCAGATCAGTTGCGCTGGAATGAAGCCCTTAGCCATCGAGGTAACCAGCCAAAGGGAT
TCCAGCTGTTTCCAGACCCTCCCCCAATAGGGCATTGCATCTGCCCTACCCCATGTTCCT
GGGCATCTCTTCTGCACTCAGCCCACAGCTTCAGACCCACGATGCCTGAGGGAGAAACTG
GGTAAGGGGTGGCCTTCTGTAGCCGCCCAGTTGAGTGGTTGGCCTTCATCTCCTATGACC
TCATTCTCCCCATAGGCAAGATGGGTAAATAACATTTATAAGACATTTCTCTGCATTTTA
GAGAACTGTGGGCCCTTGTGGCAGTGGCAGCTGAGGCCTGAGTGGAGAACAGGCCTGAGT
AGAGTGCATCCAGGGGCATCCCCAGTACCTGGCTACCCTGCAGGGTCAGTCTGGAAAACC
AGTTGGCCATGCTACTGACTGTGCAGCCCAATGGGACTTGTGTCTTTGATGACATTCTGG
TATTCCCACTGGTTTTCCACCTGAATAGTGCTACCTTCACACCCGCTGGAACACACCCTT
CCTGAAATCCACTCACCCTGTGCCTTTGGCACTCTGTGCTCTCCCATCTCCTAACATTCC
GCCACCCTTCCCCCACTTAGAGGGCTTCTTTTCTTCCCAGCAAGTAATCCTAGCCATCCT
CCCCACCCCCACACCCTGGGGGGATGGCCACTGACTTTCCCTGTACTGGGCCTCACAGGG
GACACCTGAATGGCTTCTGTTAGGACTTTGCCCACCTTCTCTCAGAGAGTGCATGGTAGC
CTAGTGTGGCCTGTCTCACTTTCCTAGGAGATGTGACCCACTAACATGTGGCAGCTCTAA
CCCAAAGGCCCCCTCAGATGCATTACAGTAAATCTGGAGCCAGAGAGAGAGGTCCCCTCC
ATTCACAGCCCACTGGATTAGACATTCCGTGTAGGGCTTACTTAGAATGAAAGATACTTG
AATTACTGAGCGCTGCGAGCGCCCAGCTTCTGTTACAGTGTTAGCCATTGTCTACACAGG
TGGCCATTGTCACGAAATGAGAGTGATGCCTGAAGATCTCGATGATGCTTGAGCCTTTTA
TGTAACTTTTATTAAGTCTTTGTGTATCTCAACTCATTAATAAAGAAAAGAAGAGGAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               1017-1128, - strand, RNAz p=0.981864

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1017-1128, - strand, RNAz p=0.981864

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-1557, gnl|bosTau2|chr1 (82196493-82194931)
               

               
               1-1557, gnl|Hg17|chr3 (139605545-139607068)
               

               
               1-1557, gnl|Mm7|chr9 (99028998-99027597)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1557, gnl|bosTau2|chr1 (82196493-82194931)
               

               
               1-1557, gnl|Hg17|chr3 (139605545-139607068)
               

               
               1-1557, gnl|Mm7|chr9 (99028998-99027597)

Expressed library(ies): 11 entry(ies)

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Expressed library(ies): 11 entry(ies)

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               fcc (0.39557)
               

               
               hyp (0.285673)
               

               
               cga (0.279096)
               

               
               nca (0.273748)
               

               
               ebs (0.236602)
               

               
               ece (0.229305)
               

               
               spc (0.226732)
               

               
               fbs (0.175346)
               

               
               eye (0.170503)
               

               
               bfe (0.149858)
               

               
               eru (0.120048)

Expressed library(ies): 11 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fcc (0.39557)
               

               
               hyp (0.285673)
               

               
               cga (0.279096)
               

               
               nca (0.273748)
               

               
               ebs (0.236602)
               

               
               ece (0.229305)
               

               
               spc (0.226732)
               

               
               fbs (0.175346)
               

               
               eye (0.170503)
               

               
               bfe (0.149858)
               

               
               eru (0.120048)

	1-1557, gnl\|bosTau2\|chr1 (82196493-82194931)
	1-1557, gnl\|Hg17\|chr3 (139605545-139607068)
	1-1557, gnl\|Mm7\|chr9 (99028998-99027597)

	fcc (0.39557)
	hyp (0.285673)
	cga (0.279096)
	nca (0.273748)
	ebs (0.236602)
	ece (0.229305)
	spc (0.226732)
	fbs (0.175346)
	eye (0.170503)
	bfe (0.149858)
	eru (0.120048)