Non-Coding RNA Search

Ss1.1-Pig2-127I18.5

Sequence:


               
               CTCTTGGCTCTTCCTGTTTTCCACACACTTAAATAGAAATTGGCTTTGGAAATACTGTGG
GAAACCTCAGACCTCACCAAGTAGCAGTCGTGCAATTGAAAACTGGCGCCGTGTCATGGA
GCTGTCACACGACTCAGTCGTAGTTTAAATGCAGTCAACATAGGTGCATGCCACTTAACT
GTAACTCCGGTCACGTGTCTGTGCAGTTGAAAAATGAACGTCTCTTACCTTTTATGTAGG
TTAAGACATGTACCTTATCTTTACCACTCAGGGTGGGTTTTGAAGGATGGTTCTAGGTCT
GGTCTTGTTGGAATTGTCCAGATGCTTTCTATGTGAACCTCTGAACCAAGGGATGACCTT
CTGGAAGCTGCATCCATGCCTTCCCACGGTTTAGTGTAAGCCCAGTCTCCTCGCTTTTCT
CTAAGTAAATGCTGGCAGGCCCCATCCTGAGCAGAGCAGCCAGAGGGGGCTTCCAGATTT
GTCAAAGGGGGCCCATTGTCCAGCCATCAGTGACAGCCGTGGTCACTGGCATCGTTGCTT
GGGACGTAGCCCTGACTAGAAGCAGAGAAAGCTGGGTCACAGCTGGACCTAGCCTCCCTC
CAGGGTTTCCCATGTTGGCTCAGGGCCCTGGGAGGCGCAGCCGGTGGCTGGACCGCCCTT
GTCACAGCTGCCCGCAAGGCCTACTGGAAGGAACGTGGGGCACAGAGCCCAATCCTGGTT
CTGGTTCTCCCCTTAACCAGCTGATGAACCTTATACCATCAAGTTGACTCTGTGCCTTGA
TTTTTCCATTCTTCTGGTAGGGGAGAGGCCTATTCTATTTGCCCCTTGGAGGGTGCTTTG
AGGTGAGTTAATTAATGGAACTGCGTTACGTGGAGGTGGTAGATAACTCCCACATCTGAT
TTTTAACAGCTTCCTATCACCCCCTCCGGGGGGTGGGGGGTTAGTTAAAGGAAGAAGCCA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTCTTGGCTCTTCCTGTTTTCCACACACTTAAATAGAAATTGGCTTTGGAAATACTGTGG
GAAACCTCAGACCTCACCAAGTAGCAGTCGTGCAATTGAAAACTGGCGCCGTGTCATGGA
GCTGTCACACGACTCAGTCGTAGTTTAAATGCAGTCAACATAGGTGCATGCCACTTAACT
GTAACTCCGGTCACGTGTCTGTGCAGTTGAAAAATGAACGTCTCTTACCTTTTATGTAGG
TTAAGACATGTACCTTATCTTTACCACTCAGGGTGGGTTTTGAAGGATGGTTCTAGGTCT
GGTCTTGTTGGAATTGTCCAGATGCTTTCTATGTGAACCTCTGAACCAAGGGATGACCTT
CTGGAAGCTGCATCCATGCCTTCCCACGGTTTAGTGTAAGCCCAGTCTCCTCGCTTTTCT
CTAAGTAAATGCTGGCAGGCCCCATCCTGAGCAGAGCAGCCAGAGGGGGCTTCCAGATTT
GTCAAAGGGGGCCCATTGTCCAGCCATCAGTGACAGCCGTGGTCACTGGCATCGTTGCTT
GGGACGTAGCCCTGACTAGAAGCAGAGAAAGCTGGGTCACAGCTGGACCTAGCCTCCCTC
CAGGGTTTCCCATGTTGGCTCAGGGCCCTGGGAGGCGCAGCCGGTGGCTGGACCGCCCTT
GTCACAGCTGCCCGCAAGGCCTACTGGAAGGAACGTGGGGCACAGAGCCCAATCCTGGTT
CTGGTTCTCCCCTTAACCAGCTGATGAACCTTATACCATCAAGTTGACTCTGTGCCTTGA
TTTTTCCATTCTTCTGGTAGGGGAGAGGCCTATTCTATTTGCCCCTTGGAGGGTGCTTTG
AGGTGAGTTAATTAATGGAACTGCGTTACGTGGAGGTGGTAGATAACTCCCACATCTGAT
TTTTAACAGCTTCCTATCACCCCCTCCGGGGGGTGGGGGGTTAGTTAAAGGAAGAAGCCA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               483-668, - strand, RNAz p=0.932716

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               483-668, - strand, RNAz p=0.932716

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               23-933, gnl|bosTau2|chr11 (42474462-42475375)
               

               
               23-933, gnl|Hg17|chr1 (42551524-42552485)
               

               
               23-933, gnl|Mm7|chr4 (118842931-118842052)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               23-933, gnl|bosTau2|chr11 (42474462-42475375)
               

               
               23-933, gnl|Hg17|chr1 (42551524-42552485)
               

               
               23-933, gnl|Mm7|chr4 (118842931-118842052)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               eye (0.170503)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               eye (0.170503)

	23-933, gnl\|bosTau2\|chr11 (42474462-42475375)
	23-933, gnl\|Hg17\|chr1 (42551524-42552485)
	23-933, gnl\|Mm7\|chr4 (118842931-118842052)