Non-Coding RNA Search

Ss1.1-Pig2-127J06.5

Sequence:


               
               GTGAAACTCGCCCTAAACTCTCTTTATGTGTGGCACCTGACCTCAAAGTCCTCTCTCTCT
GCCCCTCTCTCTTGACTTCATGCAGTCCTCATCACAGCCTCACAGGGAGATGGTACACCT
TCCATCTTCTAGATGAGAAAGCTGGAGATGAGAGGCAGGAAGCTCACACAGTAGAAGTGG
TACAGCTGAGCTCCCACCCAAAGCTCATGTGCCTCCAAAGCTCATTTTTTTCCTCCCCAG
CCCACGTCTCCCAGGTCAATGGAACTGCTCCCCAATCACGCCCGGTAGTCTTGCACAAAG
CCTTGCTCTCCTACACCTGTCACCTTTCCAGTAAAATGTCACAGTCCTCCTGGTTCCCTG
GAGGGAAGAGTGATTCTTGTACCAACTGTTTCCCTTGCTGTTCAGTGGATCCTGCCTATT
CCTTTGAGCATCTTCACAATCCAGCTGTCGGTGGCAGAAGACAAAGCTACATAAATGGTC
CATCTGGTTCATGCTGGAATCCGTTTGCTCTGGGAGTTTGGTGTGGCTACAGATGATCCC
ACAAATGCCTCTTGTTCGTTGCCCCCAGGGATCTCCTCTCATTGTTTCCACCGAACAAGT
TCAAATGTCCTTCCTGACTCTGGTCTTTGGTCTCTAGACTATACCTTTATTTCAGGGCTT
TGAAATCCTGCAGAAACAGGTGAGTCGTCAAAAACCTTCTCTGGAAGGCCAGACGCTCAG
AGCACTTGTGTTTCTCTGTCTCAATATTAAAAGATCAAGGTTCCCAGTGGAGCCAACCTG
ATCTAATAATTGGGCTCTTCTTTTCCCTCTGAATCCTCTTCCAAGGGAGAGAAGCACAGC
CCCAGCCTCCAAAATTAAGCATCCGGGTCGAAGGCCAAGTTCCAAGTCTGGCAGCCACCA
TTTAGTTGGGGGGCCAAGGGCGTTGCTGTTGGGGAGGTAAGGCAGGCACCGCCCCTCTTG
AAAACCATCCTAGAAAGATGAGCCCACTTGGTCAGATGTGCCAATCATTCCCAGTTTTAA
AGAGGAAAATGC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTGAAACTCGCCCTAAACTCTCTTTATGTGTGGCACCTGACCTCAAAGTCCTCTCTCTCT
GCCCCTCTCTCTTGACTTCATGCAGTCCTCATCACAGCCTCACAGGGAGATGGTACACCT
TCCATCTTCTAGATGAGAAAGCTGGAGATGAGAGGCAGGAAGCTCACACAGTAGAAGTGG
TACAGCTGAGCTCCCACCCAAAGCTCATGTGCCTCCAAAGCTCATTTTTTTCCTCCCCAG
CCCACGTCTCCCAGGTCAATGGAACTGCTCCCCAATCACGCCCGGTAGTCTTGCACAAAG
CCTTGCTCTCCTACACCTGTCACCTTTCCAGTAAAATGTCACAGTCCTCCTGGTTCCCTG
GAGGGAAGAGTGATTCTTGTACCAACTGTTTCCCTTGCTGTTCAGTGGATCCTGCCTATT
CCTTTGAGCATCTTCACAATCCAGCTGTCGGTGGCAGAAGACAAAGCTACATAAATGGTC
CATCTGGTTCATGCTGGAATCCGTTTGCTCTGGGAGTTTGGTGTGGCTACAGATGATCCC
ACAAATGCCTCTTGTTCGTTGCCCCCAGGGATCTCCTCTCATTGTTTCCACCGAACAAGT
TCAAATGTCCTTCCTGACTCTGGTCTTTGGTCTCTAGACTATACCTTTATTTCAGGGCTT
TGAAATCCTGCAGAAACAGGTGAGTCGTCAAAAACCTTCTCTGGAAGGCCAGACGCTCAG
AGCACTTGTGTTTCTCTGTCTCAATATTAAAAGATCAAGGTTCCCAGTGGAGCCAACCTG
ATCTAATAATTGGGCTCTTCTTTTCCCTCTGAATCCTCTTCCAAGGGAGAGAAGCACAGC
CCCAGCCTCCAAAATTAAGCATCCGGGTCGAAGGCCAAGTTCCAAGTCTGGCAGCCACCA
TTTAGTTGGGGGGCCAAGGGCGTTGCTGTTGGGGAGGTAAGGCAGGCACCGCCCCTCTTG
AAAACCATCCTAGAAAGATGAGCCCACTTGGTCAGATGTGCCAATCATTCCCAGTTTTAA
AGAGGAAAATGC

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               604-710, - strand, RNAz p=0.655625

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               604-710, - strand, RNAz p=0.655625

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               65-1032, gnl|bosTau2|chr14 (4827892-4828858)
               

               
               65-1032, gnl|Hg17|chr8 (133203705-133202750)
               

               
               65-1032, gnl|Mm7|chr15 (66071196-66070221)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               65-1032, gnl|bosTau2|chr14 (4827892-4828858)
               

               
               65-1032, gnl|Hg17|chr8 (133203705-133202750)
               

               
               65-1032, gnl|Mm7|chr15 (66071196-66070221)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               fbs (0.175346)
               

               
               hyp (0.142837)
               

               
               ecc (0.115035)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fbs (0.175346)
               

               
               hyp (0.142837)
               

               
               ecc (0.115035)

	65-1032, gnl\|bosTau2\|chr14 (4827892-4828858)
	65-1032, gnl\|Hg17\|chr8 (133203705-133202750)
	65-1032, gnl\|Mm7\|chr15 (66071196-66070221)