Non-Coding RNA Search

Ss1.1-Pig2-127P18.5

Sequence:


               
               TCACGTCCCGGGAGATCCAGACGGCCGTGCGCCTGCTGCTGCCGGGGGAGCTGGCCAAGC
ACGCCGTGTCCGAGGGCACCAAGGCTGTCACCAAGTACACCAGCTCCAAGTAAATCTGTC
TTCTGCAACAATACCAATAACTCAAGGCTCTTTTAAGAGCCACCCACGTTGTCTCTTAAA
GATCTGTAACTACAGTTTGTGAAAGTGGCTTGACCAATCAATGAGAAAAGTATTTTATTG
CCATCAAAGTTCACCTTTTTGAGCGGTGGTGGGGCAGAGAACCATGGGTAAGAAAGCATA
AACCTGTGTTCAAAAGTGTCATTTTCCATTTATTAGCCATATGTCTGCAAATAGCTGCGA
GGGAGAGCAAAACTTGCCTATTTGATATCTCTATTATTCTAGACTAGTTAAGCTTAAGAA
AAAGGACCAACTTTGAGAACGTAGAAACTGTTATTCTTGTAAGACATATTTACAAGGGAA
ATTCCCATTTATAATAGTGTCTCCCTCGGTGTACCTGGAAGAGTACGGCCTAATGTCTAA
ATCTGCATAACCGCCTTACCCGTGTTTACTGTGCTTTTCCTGGTTACCTCCCACAACCGA
CTCCCCCAAACATTCTTTGTATCTGAAATAGTATTTAAGGTGGTGGCTTCAGCCATTTCC
TCCATGAACTTAGTTTTCCTGGGGCTGGCTCTCCAATGTATACAGGAGGAATACATGTTA
ATGCCTTATGTTTTTCTGCCGTTAATCTGTCTTGTATCAATTATTAGACCAGCCAGAGAA
CCTAGAAAGGAAGAAGGAAAAAATTTTCCTCCATACATTGACTGGATTTTTGTGAACATT
AAGTTACTGTATTTTTTAATAGTGTTGTGAATCAAATTCCCTAAACCCCATATATAATAA
AGGGCCTTCTTAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TCACGTCCCGGGAGATCCAGACGGCCGTGCGCCTGCTGCTGCCGGGGGAGCTGGCCAAGC
ACGCCGTGTCCGAGGGCACCAAGGCTGTCACCAAGTACACCAGCTCCAAGTAAATCTGTC
TTCTGCAACAATACCAATAACTCAAGGCTCTTTTAAGAGCCACCCACGTTGTCTCTTAAA
GATCTGTAACTACAGTTTGTGAAAGTGGCTTGACCAATCAATGAGAAAAGTATTTTATTG
CCATCAAAGTTCACCTTTTTGAGCGGTGGTGGGGCAGAGAACCATGGGTAAGAAAGCATA
AACCTGTGTTCAAAAGTGTCATTTTCCATTTATTAGCCATATGTCTGCAAATAGCTGCGA
GGGAGAGCAAAACTTGCCTATTTGATATCTCTATTATTCTAGACTAGTTAAGCTTAAGAA
AAAGGACCAACTTTGAGAACGTAGAAACTGTTATTCTTGTAAGACATATTTACAAGGGAA
ATTCCCATTTATAATAGTGTCTCCCTCGGTGTACCTGGAAGAGTACGGCCTAATGTCTAA
ATCTGCATAACCGCCTTACCCGTGTTTACTGTGCTTTTCCTGGTTACCTCCCACAACCGA
CTCCCCCAAACATTCTTTGTATCTGAAATAGTATTTAAGGTGGTGGCTTCAGCCATTTCC
TCCATGAACTTAGTTTTCCTGGGGCTGGCTCTCCAATGTATACAGGAGGAATACATGTTA
ATGCCTTATGTTTTTCTGCCGTTAATCTGTCTTGTATCAATTATTAGACCAGCCAGAGAA
CCTAGAAAGGAAGAAGGAAAAAATTTTCCTCCATACATTGACTGGATTTTTGTGAACATT
AAGTTACTGTATTTTTTAATAGTGTTGTGAATCAAATTCCCTAAACCCCATATATAATAA
AGGGCCTTCTTAAAAAAAAAAAAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               73-189, - strand, RNAz p=0.98588

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               73-189, - strand, RNAz p=0.98588

Aligned organism(s): 19 entry(ies)

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Aligned organism(s): 19 entry(ies)

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               1-189, gnl|bosTau2|chr23 (24170810-24171002)
               

               
               1-189, gnl|canFam2|chr35 (27110197-27110430)
               

               
               1-189, gnl|danRer3|chrUn (80945987-80945760)
               

               
               1-189, gnl|dasNov1|scaffold_41495 (6892-7125)
               

               
               1-189, gnl|echTel1|scaffold_249820 (5871-6106)
               

               
               1-189, gnl|fr1|chrUn (92992841-92992622)
               

               
               1-189, gnl|galGal2|chr1 (44904537-44904774)
               

               
               1-189, gnl|hg17|chr6 (26266602-26266836)
               

               
               1-189, gnl|Hg17|chr6 (26266645-26266837)
               

               
               1-189, gnl|loxAfr1|scaffold_16173 (3784-3545)
               

               
               1-189, gnl|mm7|chr13 (22986653-22986463)
               

               
               1-189, gnl|monDom2|scaffold_66 (8418348-8418135)
               

               
               1-189, gnl|oryCun1|scaffold_197800 (98198-98431)
               

               
               1-189, gnl|panTro1|chr5 (26743140-26743374)
               

               
               1-189, gnl|rheMac2|chr4 (26150003-26150237)
               

               
               1-189, gnl|rn3|chr17 (48404200-48404004)
               

               
               1-189, gnl|tetNig1|chrUn_random (134560543-134560341)
               

               
               1-189, gnl|xenTro1|scaffold_1292 (70789-71016)
               


               
               538-901, gnl|bosTau2|chr12 (1674486-1674863)

Aligned organism(s): 19 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-189, gnl|bosTau2|chr23 (24170810-24171002)
               

               
               1-189, gnl|canFam2|chr35 (27110197-27110430)
               

               
               1-189, gnl|danRer3|chrUn (80945987-80945760)
               

               
               1-189, gnl|dasNov1|scaffold_41495 (6892-7125)
               

               
               1-189, gnl|echTel1|scaffold_249820 (5871-6106)
               

               
               1-189, gnl|fr1|chrUn (92992841-92992622)
               

               
               1-189, gnl|galGal2|chr1 (44904537-44904774)
               

               
               1-189, gnl|hg17|chr6 (26266602-26266836)
               

               
               1-189, gnl|Hg17|chr6 (26266645-26266837)
               

               
               1-189, gnl|loxAfr1|scaffold_16173 (3784-3545)
               

               
               1-189, gnl|mm7|chr13 (22986653-22986463)
               

               
               1-189, gnl|monDom2|scaffold_66 (8418348-8418135)
               

               
               1-189, gnl|oryCun1|scaffold_197800 (98198-98431)
               

               
               1-189, gnl|panTro1|chr5 (26743140-26743374)
               

               
               1-189, gnl|rheMac2|chr4 (26150003-26150237)
               

               
               1-189, gnl|rn3|chr17 (48404200-48404004)
               

               
               1-189, gnl|tetNig1|chrUn_random (134560543-134560341)
               

               
               1-189, gnl|xenTro1|scaffold_1292 (70789-71016)
               


               
               538-901, gnl|bosTau2|chr12 (1674486-1674863)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

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               thg (0.126791)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               thg (0.126791)

	1-189, gnl\|bosTau2\|chr23 (24170810-24171002)
	1-189, gnl\|canFam2\|chr35 (27110197-27110430)
	1-189, gnl\|danRer3\|chrUn (80945987-80945760)
	1-189, gnl\|dasNov1\|scaffold_41495 (6892-7125)
	1-189, gnl\|echTel1\|scaffold_249820 (5871-6106)
	1-189, gnl\|fr1\|chrUn (92992841-92992622)
	1-189, gnl\|galGal2\|chr1 (44904537-44904774)
	1-189, gnl\|hg17\|chr6 (26266602-26266836)
	1-189, gnl\|Hg17\|chr6 (26266645-26266837)
	1-189, gnl\|loxAfr1\|scaffold_16173 (3784-3545)
	1-189, gnl\|mm7\|chr13 (22986653-22986463)
	1-189, gnl\|monDom2\|scaffold_66 (8418348-8418135)
	1-189, gnl\|oryCun1\|scaffold_197800 (98198-98431)
	1-189, gnl\|panTro1\|chr5 (26743140-26743374)
	1-189, gnl\|rheMac2\|chr4 (26150003-26150237)
	1-189, gnl\|rn3\|chr17 (48404200-48404004)
	1-189, gnl\|tetNig1\|chrUn_random (134560543-134560341)
	1-189, gnl\|xenTro1\|scaffold_1292 (70789-71016)

	538-901, gnl\|bosTau2\|chr12 (1674486-1674863)