Non-Coding RNA Search

Ss1.1-Pig2-128E12.5

Sequence:


               
               CTGACGTGTCGGGATCTCACTGGGCCTAAATCGTCGACGGGTCAGAGTCTTAGGCGTGAA
GTTTCCTGGTCGGGAAGAAAGGTCGTCTGAATTAGGAGATGCAAGCGGGCAAGCCCATCC
TCTATTCCTATTTCCGAAGCTCCTGCTCGTGGAGAGTGCGAATTGCTCTGGCCTTGAAAA
ACATCGACTATGAGATAGTAGCCATCAACCTTATAAAGGATGGGGGGCAGCAGTTCTCCA
AAGAATTCCAGGCCCTGAATCCCATGAAGCAGGTGCCGGCCCTGAAGATTGATGGAATCA
CCCTCAGCCAGTCACTGGCCATCATTGAGTACCTGGAGGAGACCCGGCCCACGCCCCGAC
TTCTGCCTCAGGACCCAAAGAAGAGGGCCCAAGTGCGCATGATTTCTGACCTCCTCGCCA
GTGGCATCCAACCCCTGCAGAACTTGTCTGTCCTGAATCAAGTGGGAAAGGAGAACCAGC
TGACCTGGGCCCAGCGGGTCATCGCTCCTGGCTTTAACGCTCTGGAGCAGATCCTGCAGA
GCACAGCGGGGAAGTACTGCATGGGAGATGAGGTGTCCATGGCTGACCTGTGCTTAGTGC
CTCAGGTGGCAAATGCTGAAAGGTACAAGGTGGATCTCTCTCCCTACCCCACCATCAGCC
GCATCAACAAGTCCCTGCTGGCCTTGGAGGCCTTCCAAGTGTCTCACCCCAGCCGGCAGC
CAGATACACCCCCCGAGCTGAGGGCCTAGCTCTCAAACTGTATCCCACTGGTGCTGGGGC
AGGGAGCGGGTGTGGGAGCAGAAGCTGGGTGAGCTGAATGGGCCTGGAAATAAGTGAGTC
CCAACTGGAGAGGCAGAAGACTTGAACTCCTAGCCCTTGACCTTGAACTCTCGCCCTGTA
TCTCCCTTCCCACTGAACCTCTTTCTGGGTCAGCCCCCTCATGTGTTACATGTGGGGAGG
GTGGCAGGGGGCTGCCAGGAGGAGGCTGGGCGGGAGCGTTGCCTGCTATCTGTGTCACGG
GCAGTCATGAAATGAATGTAAAGTGTCTGGCACATTTACAGAGAGCCACGAGCAAGGTCA
AGTGTCTCTTTCCAGACCCTCCCCTGTACCTGACTCCAGAGAATTGCCCCCCACCCAAAA
ATTGGATAATTAAAGCCCAAGCCTTCCAGGTTGTTGTGTTAAGGCTGAGCTGGGTTCCAG
AAGGTAAACACTTCCCAGCTGGAATCCCCCTGCGTCTGGACCAGGAGAGAGAGTCAGCAG
CCACTTGCCCCCACTGTGGTTGGCCTGGCCGCTGGGACCTCAGGGCAAGGGAGAGAAGTC
AGCCCAAAATCCTGCCCGAGAGCA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTGACGTGTCGGGATCTCACTGGGCCTAAATCGTCGACGGGTCAGAGTCTTAGGCGTGAA
GTTTCCTGGTCGGGAAGAAAGGTCGTCTGAATTAGGAGATGCAAGCGGGCAAGCCCATCC
TCTATTCCTATTTCCGAAGCTCCTGCTCGTGGAGAGTGCGAATTGCTCTGGCCTTGAAAA
ACATCGACTATGAGATAGTAGCCATCAACCTTATAAAGGATGGGGGGCAGCAGTTCTCCA
AAGAATTCCAGGCCCTGAATCCCATGAAGCAGGTGCCGGCCCTGAAGATTGATGGAATCA
CCCTCAGCCAGTCACTGGCCATCATTGAGTACCTGGAGGAGACCCGGCCCACGCCCCGAC
TTCTGCCTCAGGACCCAAAGAAGAGGGCCCAAGTGCGCATGATTTCTGACCTCCTCGCCA
GTGGCATCCAACCCCTGCAGAACTTGTCTGTCCTGAATCAAGTGGGAAAGGAGAACCAGC
TGACCTGGGCCCAGCGGGTCATCGCTCCTGGCTTTAACGCTCTGGAGCAGATCCTGCAGA
GCACAGCGGGGAAGTACTGCATGGGAGATGAGGTGTCCATGGCTGACCTGTGCTTAGTGC
CTCAGGTGGCAAATGCTGAAAGGTACAAGGTGGATCTCTCTCCCTACCCCACCATCAGCC
GCATCAACAAGTCCCTGCTGGCCTTGGAGGCCTTCCAAGTGTCTCACCCCAGCCGGCAGC
CAGATACACCCCCCGAGCTGAGGGCCTAGCTCTCAAACTGTATCCCACTGGTGCTGGGGC
AGGGAGCGGGTGTGGGAGCAGAAGCTGGGTGAGCTGAATGGGCCTGGAAATAAGTGAGTC
CCAACTGGAGAGGCAGAAGACTTGAACTCCTAGCCCTTGACCTTGAACTCTCGCCCTGTA
TCTCCCTTCCCACTGAACCTCTTTCTGGGTCAGCCCCCTCATGTGTTACATGTGGGGAGG
GTGGCAGGGGGCTGCCAGGAGGAGGCTGGGCGGGAGCGTTGCCTGCTATCTGTGTCACGG
GCAGTCATGAAATGAATGTAAAGTGTCTGGCACATTTACAGAGAGCCACGAGCAAGGTCA
AGTGTCTCTTTCCAGACCCTCCCCTGTACCTGACTCCAGAGAATTGCCCCCCACCCAAAA
ATTGGATAATTAAAGCCCAAGCCTTCCAGGTTGTTGTGTTAAGGCTGAGCTGGGTTCCAG
AAGGTAAACACTTCCCAGCTGGAATCCCCCTGCGTCTGGACCAGGAGAGAGAGTCAGCAG
CCACTTGCCCCCACTGTGGTTGGCCTGGCCGCTGGGACCTCAGGGCAAGGGAGAGAAGTC
AGCCCAAAATCCTGCCCGAGAGCA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               gi|6754092|ref|NP_034493.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|6754092|ref|NP_034493.1|

Aligned organism(s): 5 entry(ies)

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Aligned organism(s): 5 entry(ies)

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               315-440, gnl|bosTau2|chr10 (62086036-62085911)
               

               
               315-440, gnl|Hg17|chr14 (76864008-76864133)
               

               
               315-440, gnl|Mm7|chr12 (85162624-85162749)
               


               
               621-1342, gnl|bosTau2|chr10 (62081853-62081134)
               

               
               621-1342, gnl|Hg17|chr14 (76867163-76867869)

Aligned organism(s): 5 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               315-440, gnl|bosTau2|chr10 (62086036-62085911)
               

               
               315-440, gnl|Hg17|chr14 (76864008-76864133)
               

               
               315-440, gnl|Mm7|chr12 (85162624-85162749)
               


               
               621-1342, gnl|bosTau2|chr10 (62081853-62081134)
               

               
               621-1342, gnl|Hg17|chr14 (76867163-76867869)

Expressed library(ies): 8 entry(ies)

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Expressed library(ies): 8 entry(ies)

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               cli (1.06968)
               

               
               pla (0.401016)
               

               
               cov (0.264306)
               

               
               mas (0.210305)
               

               
               cag (0.151194)
               

               
               cly (0.120642)
               

               
               eru (0.120048)
               

               
               nbm (0.0993246)

Expressed library(ies): 8 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cli (1.06968)
               

               
               pla (0.401016)
               

               
               cov (0.264306)
               

               
               mas (0.210305)
               

               
               cag (0.151194)
               

               
               cly (0.120642)
               

               
               eru (0.120048)
               

               
               nbm (0.0993246)

	315-440, gnl\|bosTau2\|chr10 (62086036-62085911)
	315-440, gnl\|Hg17\|chr14 (76864008-76864133)
	315-440, gnl\|Mm7\|chr12 (85162624-85162749)

	621-1342, gnl\|bosTau2\|chr10 (62081853-62081134)
	621-1342, gnl\|Hg17\|chr14 (76867163-76867869)

	cli (1.06968)
	pla (0.401016)
	cov (0.264306)
	mas (0.210305)
	cag (0.151194)
	cly (0.120642)
	eru (0.120048)
	nbm (0.0993246)