Ss1.1-Pig2-128F18.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CTCTGCGCTGGAGAGAGCCACATCCTTCCTGGAGAAGAGGCTGCCAGAAATCAACCTGGA TGGCATGGTGGGGTTCCGGGTCCTGGAAGCACAGCTCCAAGGCGTCCAGGAGAAGTGGGC CCGGGATCCCCAGCTGCAGCCGCTCAGCCTGCGTGTGGGGGAGCTGGCAGACAAGCTGGC TCCTCTCCTCCACAGATCCATCTTCTACCTCAGGCTGAGTGACCCCGAGTACCTAAGAGA GTTCCAGCCGACCATCGAGCCTGGGTTTTGGAAGCTCCCGCGTGCCTGGACCCACACCAG CGACTCCATGGTCTACACCTCGTTCGAGCCACAGGACTCCTTCTCAGAGGAGCACAGTGA CCTGTGCCTGGCACAGCTTCTGGGAACTGGGGCAGACAGCAGCCCGCCCTGCAGGCTCTC AGACTTCTGCAGAAACCTCATGACCAAGCCTGGCTGCTCTGGCTACTGTCTGTCCCACCA GATGCTCTTCTTTCTCTCGGCCAGAATGAGGGGATGCACAGAGGGGCTGTTCCGCCAAAG CCGGCGCTACATGAATCTCTTCTGCGCCAACATGATGGACGTGAACCGGAGAGCTGAAGC CATCGGCTACACCTACCCCACCCGGGATGTCTTCATGGAAAACATCATGTTTTGTGGCCT GGGTGGCTTCTCTGACTTCTACAAGCTTCGGTGGCTGGAGGCCATTCTCAGCTGGCAGAA GCCGCAGGAAGGATGCTTCGGGAGGCCTGCTGCTGACGGTGAAGAATTACCTAAAGCCAT TCACCACCAACA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CTCTGCGCTGGAGAGAGCCACATCCTTCCTGGAGAAGAGGCTGCCAGAAATCAACCTGGA TGGCATGGTGGGGTTCCGGGTCCTGGAAGCACAGCTCCAAGGCGTCCAGGAGAAGTGGGC CCGGGATCCCCAGCTGCAGCCGCTCAGCCTGCGTGTGGGGGAGCTGGCAGACAAGCTGGC TCCTCTCCTCCACAGATCCATCTTCTACCTCAGGCTGAGTGACCCCGAGTACCTAAGAGA GTTCCAGCCGACCATCGAGCCTGGGTTTTGGAAGCTCCCGCGTGCCTGGACCCACACCAG CGACTCCATGGTCTACACCTCGTTCGAGCCACAGGACTCCTTCTCAGAGGAGCACAGTGA CCTGTGCCTGGCACAGCTTCTGGGAACTGGGGCAGACAGCAGCCCGCCCTGCAGGCTCTC AGACTTCTGCAGAAACCTCATGACCAAGCCTGGCTGCTCTGGCTACTGTCTGTCCCACCA GATGCTCTTCTTTCTCTCGGCCAGAATGAGGGGATGCACAGAGGGGCTGTTCCGCCAAAG CCGGCGCTACATGAATCTCTTCTGCGCCAACATGATGGACGTGAACCGGAGAGCTGAAGC CATCGGCTACACCTACCCCACCCGGGATGTCTTCATGGAAAACATCATGTTTTGTGGCCT GGGTGGCTTCTCTGACTTCTACAAGCTTCGGTGGCTGGAGGCCATTCTCAGCTGGCAGAA GCCGCAGGAAGGATGCTTCGGGAGGCCTGCTGCTGACGGTGAAGAATTACCTAAAGCCAT TCACCACCAACA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 645-752, + strand, RNAz p=0.516129 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 645-752, + strand, RNAz p=0.516129 |
| Aligned organism(s): 24 entry(ies) | More info |
| Aligned organism(s): 24 entry(ies) | Help | Less info |
| 82-238, gnl|bosTau2|chr25 (4902472-4902316) | |
| 82-238, gnl|Hg17|chr16 (5052584-5052428) | |
| 82-238, gnl|Mm7|chr16 (4893695-4893539) | |
| 508-644, gnl|bosTau2|chr25 (4896921-4896785) | |
| 508-644, gnl|Hg17|chr16 (5046191-5046055) | |
| 508-644, gnl|Mm7|chr16 (4889355-4889219) | |
| 645-752, gnl|bosTau2|chr25 (4895485-4895378) | |
| 645-752, gnl|canFam2|chr6 (39439742-39439604) | |
| 645-752, gnl|danRer3|chr22 (6166219-6166104) | |
| 645-752, gnl|dasNov1|scaffold_75039 (6975-6837) | |
| 645-752, gnl|echTel1|scaffold_224745 (4710-4574) | |
| 645-752, gnl|fr1|chrUn (146990960-146990818) | |
| 645-752, gnl|galGal2|chr14 (1734329-1734203) | |
| 645-752, gnl|hg17|chr16 (5045244-5045382) | |
| 645-752, gnl|Hg17|chr16 (5045352-5045245) | |
| 645-752, gnl|loxAfr1|scaffold_26486 (20995-20855) | |
| 645-752, gnl|mm7|chr16 (4887841-4887978) | |
| 645-752, gnl|Mm7|chr16 (4887949-4887842) | |
| 645-752, gnl|monDom2|scaffold_17 (42366801-42366657) | |
| 645-752, gnl|oryCun1|scaffold_200516 (7942-8081) | |
| 645-752, gnl|panTro1|chr18 (4997807-4997945) | |
| 645-752, gnl|rheMac2|chr20 (5230090-5230228) | |
| 645-752, gnl|rn3|chr10 (10482082-10481945) | |
| 645-752, gnl|tetNig1|chr3 (14071484-14071349) |
| Aligned organism(s): 24 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 82-238, gnl|bosTau2|chr25 (4902472-4902316) | |
| 82-238, gnl|Hg17|chr16 (5052584-5052428) | |
| 82-238, gnl|Mm7|chr16 (4893695-4893539) | |
| 508-644, gnl|bosTau2|chr25 (4896921-4896785) | |
| 508-644, gnl|Hg17|chr16 (5046191-5046055) | |
| 508-644, gnl|Mm7|chr16 (4889355-4889219) | |
| 645-752, gnl|bosTau2|chr25 (4895485-4895378) | |
| 645-752, gnl|canFam2|chr6 (39439742-39439604) | |
| 645-752, gnl|danRer3|chr22 (6166219-6166104) | |
| 645-752, gnl|dasNov1|scaffold_75039 (6975-6837) | |
| 645-752, gnl|echTel1|scaffold_224745 (4710-4574) | |
| 645-752, gnl|fr1|chrUn (146990960-146990818) | |
| 645-752, gnl|galGal2|chr14 (1734329-1734203) | |
| 645-752, gnl|hg17|chr16 (5045244-5045382) | |
| 645-752, gnl|Hg17|chr16 (5045352-5045245) | |
| 645-752, gnl|loxAfr1|scaffold_26486 (20995-20855) | |
| 645-752, gnl|mm7|chr16 (4887841-4887978) | |
| 645-752, gnl|Mm7|chr16 (4887949-4887842) | |
| 645-752, gnl|monDom2|scaffold_17 (42366801-42366657) | |
| 645-752, gnl|oryCun1|scaffold_200516 (7942-8081) | |
| 645-752, gnl|panTro1|chr18 (4997807-4997945) | |
| 645-752, gnl|rheMac2|chr20 (5230090-5230228) | |
| 645-752, gnl|rn3|chr10 (10482082-10481945) | |
| 645-752, gnl|tetNig1|chr3 (14071484-14071349) |
| Expressed library(ies): 2 entry(ies) | More info |
| Expressed library(ies): 2 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| ton (0.1755) | |
| pty (0.142714) |